sci-biology/bowtie
Popular short read aligner for Next-generation sequencing data
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commit 77a54a4d9f64ce2bfff0ef2928500cefd5cb1b9d
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Wed Mar 17 11:37:01 2021 +0100
sci-biology/bowtie: add version 1.3.0
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit ecf85a996b942336d7f2e23c11e3acd723914e36
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Mar 16 19:15:31 2021 +0100
sci-biology/bowtie: EAPI bump bowtie-1
patch does not apply (anymore)
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 841b73539cdc92799497752d37b764c16793582b
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Mar 16 19:11:02 2021 +0100
Revert "sci-biology/bowtie: drop old"
This reverts commit 718c86792641e4203877c23d69e9d4dcb0274388.
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 718c86792641e4203877c23d69e9d4dcb0274388
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 11:02:43 2021 +0100
sci-biology/bowtie: drop old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3b6fcb10881cdda5486994a4b3e6a6c1476f6946
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 11:02:19 2021 +0100
sci-biology/bowtie: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 7653e736bbdbd6d7373e8015b0b79e1855032f83
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed Dec 30 23:52:06 2020 +0100
sci-biology/bowtie: version bump
the sci-biology/sra_sdk is not complete in Gentoo so bowtie cannot
use this optional dependency (yet)
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 1f6479da30739c1e62b5df19384df7e5c2674e14
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sat Feb 29 00:06:48 2020 +0100
sci-biology/bowtie: version bump (bugfix release)
Package-Manager: Portage-2.3.87, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 731ea47715109fabdd7cc3944b6c522509619f56
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed Feb 26 09:48:45 2020 +0100
sci-biology/bowtie: version bump to 2.4.0, drop old 2.3.5
Package-Manager: Portage-2.3.87, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 37d6c90ece12854ac4ae220e0d95bc88ec3af1b9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 23 16:38:01 2019 +0100
sci-biology/bowtie: version bump
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 346ebf0f53a5e272706bcb6ad909ad72a62bb4c7
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 30 00:28:32 2019 +0100
sci-biology/bowtie: add another upstream patch
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 2b44f30b60c65d2485250cb71e7dabe10a2694a6
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 27 23:45:47 2019 +0100
sci-biology/bowtie: patch --interleaved, add KEYWORDS
Do not unset contents of CFLAGS and CXXFLAGS.
Thanks to ch4rr0 at
https://github.com/BenLangmead/bowtie2/issues/239
Add deemed patch from
https://github.com/BenLangmead/bowtie2/issues/240
Added KEYWORDS.
Closes: https://bugs.gentoo.org/649824
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 922b05adcf80432d8e8212128b90b456b8ad3fc5
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 25 12:20:55 2019 +0100
sci-biology/bowtie: update SRC_URI and hash for 2.3.5
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit b6846dd42e04e42c0103983272b6db0db248f75a
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:26:14 2019 +0100
sci-biology/bowtie: removing not working -1.2.2 ebuild
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 51f9e3636c1422b40200dcc11c4122f356cfe4de
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:24:18 2019 +0100
sci-biology/bowtie: removing -9999 ebuild
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 85794dc2e25580c628e007d4a528ffc2e24d4239
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:20:51 2019 +0100
sci-biology/bowtie: working 1.2.2 snapshot
This ebuild keeps the bundled SeqAn-1.1 sources (a library of
headers) and does not insist on system-wide installed
SeqAn-1.4 (for which too many patches are needed and I am unable
to evaluate/apply them all).
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3c65e999c45f956a48f434581ed74f27732c9c2a
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Feb 18 14:44:27 2019 +0100
sci-biology/bowtie: add some compile patches from Debian
Seems both bowtie1 and bowtie2 are bound too much to SeqAn-1.1
and need more patches for SeqAn-1.4. Per reports on github
it seems one should be able to compile bowtie-1.2.2 using
-std=c++03 (but not me).
Package-Manager: Portage-2.3.59, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 525b717f7cebfc901579e10b1c45622bddf68eb6
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Oct 15 19:12:19 2015 +0200
Moved to tree
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 05f13955c6ce57de4194483c2e1e15744d02cf5d
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:50:43 2015 +0200
sci-biology/bowtie: Use 'usex' instead of defining TBB variable.
commit 87642b198308aa88ce351b935b79a58a08cf164b
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:48:48 2015 +0200
sci-biology/bowtie: Version bump to 2.2.6
dev-cpp/tbb is now supported with 'tbb' USE flag.
commit 72ec06023243088ee31dacc6a9189c986c011561
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:21:59 2015 +0200
sci-biology/bowtie: Version bump to 1.1.2
dev-cpp/tbb is now supported with 'tbb' USE flag.
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 194d20982e500571a4357b572d05fadf30725908
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jun 8 13:27:39 2015 +0200
sci-biology/bowtie: Updating remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit a6949bfe7f087ab37f5ebf875ecc154dda9d8593
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 22:37:44 2015 +0200
sci-biology/bowtie: clarified package descriptions (bowtie1 vs. bowtie2)
Package-Manager: portage-2.2.18
commit 56eef21f8af41d10246dc582ce51ec09cd514c3e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 13:00:54 2015 +0200
sci-biology/bowtie: version bump
Package-Manager: portage-2.2.18
commit d9b4902dd52631d0ff4cbf2d92a1448c722989fd
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Feb 7 14:03:26 2015 +0100
Added die to sed command for bowtie-1.1.1.ebuild
commit 9944df7ebb74c77f354dba013b5ac9d4bdab0c8f
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Fri Feb 6 22:15:40 2015 +0100
Removed all patches, setting CXXFLAGS and such via emake now. Fixed the wrong manpage categories.
commit 60ba53b88755c62f589c3787765bd6f39da78eef
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Fri Feb 6 09:52:03 2015 +0100
Updated bowtie: ebuilds to match current ebuild policy.
commit 59c62dccda24a226ceb535dee59e081c4f1002eb
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Thu Feb 5 22:54:51 2015 +0100
Updated sci-biology/bowtie. Bowtie1 is now properly slotted in SLOT=1. Additional build system fixes.
commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100
Sanitize ebuild header
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Sep 28 12:56:47 2013 +0200
sci-biology/bowtie: Exchange common variables, fix SRC_URI
Package-Manager: portage-2.2.7
commit 9ee84fa74a5bc48850d98dd49edbe223e8085e5a
Author: cel <cel.gentoo@gmail.com>
Date: Thu Sep 26 21:35:23 2013 +0200
sci-biology/bowtie: fixed check for sse2 support.
commit a504fdf4dfc52876baaa84103a3f6727a3419ec6
Author: cel <cel.gentoo@gmail.com>
Date: Wed Sep 25 23:55:16 2013 +0200
sci-biology/bowtie: Added ebuild for bowtie-2.1.0.
commit 6b2065b39b314c143ddea24fdddd1f6abf8c0e7e
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sun Mar 15 19:35:36 2009 -0400
In main tree
commit 9fbcdaf9e2c2eb77477d7acb2501db59b946793e
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Fri Mar 6 08:42:50 2009 -0500
Add metadata
commit 391d35e39b937fe9262b8300a6ad3a985bd66584
Author: root <root@devel.(none)>
Date: Fri Feb 27 17:14:16 2009 -0500
fix Manifest
commit b00615d22b9a7f812e10a225b64c241d474958f7
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Fri Feb 27 07:33:00 2009 -0500
New package sci-biology/bowtie
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Wed Mar 17 11:37:01 2021 +0100
sci-biology/bowtie: add version 1.3.0
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit ecf85a996b942336d7f2e23c11e3acd723914e36
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Mar 16 19:15:31 2021 +0100
sci-biology/bowtie: EAPI bump bowtie-1
patch does not apply (anymore)
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 841b73539cdc92799497752d37b764c16793582b
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Mar 16 19:11:02 2021 +0100
Revert "sci-biology/bowtie: drop old"
This reverts commit 718c86792641e4203877c23d69e9d4dcb0274388.
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 718c86792641e4203877c23d69e9d4dcb0274388
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 11:02:43 2021 +0100
sci-biology/bowtie: drop old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3b6fcb10881cdda5486994a4b3e6a6c1476f6946
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 11:02:19 2021 +0100
sci-biology/bowtie: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 7653e736bbdbd6d7373e8015b0b79e1855032f83
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed Dec 30 23:52:06 2020 +0100
sci-biology/bowtie: version bump
the sci-biology/sra_sdk is not complete in Gentoo so bowtie cannot
use this optional dependency (yet)
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 1f6479da30739c1e62b5df19384df7e5c2674e14
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sat Feb 29 00:06:48 2020 +0100
sci-biology/bowtie: version bump (bugfix release)
Package-Manager: Portage-2.3.87, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 731ea47715109fabdd7cc3944b6c522509619f56
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed Feb 26 09:48:45 2020 +0100
sci-biology/bowtie: version bump to 2.4.0, drop old 2.3.5
Package-Manager: Portage-2.3.87, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 37d6c90ece12854ac4ae220e0d95bc88ec3af1b9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 23 16:38:01 2019 +0100
sci-biology/bowtie: version bump
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 346ebf0f53a5e272706bcb6ad909ad72a62bb4c7
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 30 00:28:32 2019 +0100
sci-biology/bowtie: add another upstream patch
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 2b44f30b60c65d2485250cb71e7dabe10a2694a6
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 27 23:45:47 2019 +0100
sci-biology/bowtie: patch --interleaved, add KEYWORDS
Do not unset contents of CFLAGS and CXXFLAGS.
Thanks to ch4rr0 at
https://github.com/BenLangmead/bowtie2/issues/239
Add deemed patch from
https://github.com/BenLangmead/bowtie2/issues/240
Added KEYWORDS.
Closes: https://bugs.gentoo.org/649824
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 922b05adcf80432d8e8212128b90b456b8ad3fc5
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 25 12:20:55 2019 +0100
sci-biology/bowtie: update SRC_URI and hash for 2.3.5
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit b6846dd42e04e42c0103983272b6db0db248f75a
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:26:14 2019 +0100
sci-biology/bowtie: removing not working -1.2.2 ebuild
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 51f9e3636c1422b40200dcc11c4122f356cfe4de
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:24:18 2019 +0100
sci-biology/bowtie: removing -9999 ebuild
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 85794dc2e25580c628e007d4a528ffc2e24d4239
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 19 12:20:51 2019 +0100
sci-biology/bowtie: working 1.2.2 snapshot
This ebuild keeps the bundled SeqAn-1.1 sources (a library of
headers) and does not insist on system-wide installed
SeqAn-1.4 (for which too many patches are needed and I am unable
to evaluate/apply them all).
Package-Manager: Portage-2.3.61, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3c65e999c45f956a48f434581ed74f27732c9c2a
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Feb 18 14:44:27 2019 +0100
sci-biology/bowtie: add some compile patches from Debian
Seems both bowtie1 and bowtie2 are bound too much to SeqAn-1.1
and need more patches for SeqAn-1.4. Per reports on github
it seems one should be able to compile bowtie-1.2.2 using
-std=c++03 (but not me).
Package-Manager: Portage-2.3.59, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 525b717f7cebfc901579e10b1c45622bddf68eb6
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Oct 15 19:12:19 2015 +0200
Moved to tree
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 05f13955c6ce57de4194483c2e1e15744d02cf5d
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:50:43 2015 +0200
sci-biology/bowtie: Use 'usex' instead of defining TBB variable.
commit 87642b198308aa88ce351b935b79a58a08cf164b
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:48:48 2015 +0200
sci-biology/bowtie: Version bump to 2.2.6
dev-cpp/tbb is now supported with 'tbb' USE flag.
commit 72ec06023243088ee31dacc6a9189c986c011561
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 19:21:59 2015 +0200
sci-biology/bowtie: Version bump to 1.1.2
dev-cpp/tbb is now supported with 'tbb' USE flag.
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 194d20982e500571a4357b572d05fadf30725908
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jun 8 13:27:39 2015 +0200
sci-biology/bowtie: Updating remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit a6949bfe7f087ab37f5ebf875ecc154dda9d8593
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 22:37:44 2015 +0200
sci-biology/bowtie: clarified package descriptions (bowtie1 vs. bowtie2)
Package-Manager: portage-2.2.18
commit 56eef21f8af41d10246dc582ce51ec09cd514c3e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 13:00:54 2015 +0200
sci-biology/bowtie: version bump
Package-Manager: portage-2.2.18
commit d9b4902dd52631d0ff4cbf2d92a1448c722989fd
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Feb 7 14:03:26 2015 +0100
Added die to sed command for bowtie-1.1.1.ebuild
commit 9944df7ebb74c77f354dba013b5ac9d4bdab0c8f
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Fri Feb 6 22:15:40 2015 +0100
Removed all patches, setting CXXFLAGS and such via emake now. Fixed the wrong manpage categories.
commit 60ba53b88755c62f589c3787765bd6f39da78eef
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Fri Feb 6 09:52:03 2015 +0100
Updated bowtie: ebuilds to match current ebuild policy.
commit 59c62dccda24a226ceb535dee59e081c4f1002eb
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Thu Feb 5 22:54:51 2015 +0100
Updated sci-biology/bowtie. Bowtie1 is now properly slotted in SLOT=1. Additional build system fixes.
commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100
Sanitize ebuild header
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Sep 28 12:56:47 2013 +0200
sci-biology/bowtie: Exchange common variables, fix SRC_URI
Package-Manager: portage-2.2.7
commit 9ee84fa74a5bc48850d98dd49edbe223e8085e5a
Author: cel <cel.gentoo@gmail.com>
Date: Thu Sep 26 21:35:23 2013 +0200
sci-biology/bowtie: fixed check for sse2 support.
commit a504fdf4dfc52876baaa84103a3f6727a3419ec6
Author: cel <cel.gentoo@gmail.com>
Date: Wed Sep 25 23:55:16 2013 +0200
sci-biology/bowtie: Added ebuild for bowtie-2.1.0.
commit 6b2065b39b314c143ddea24fdddd1f6abf8c0e7e
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sun Mar 15 19:35:36 2009 -0400
In main tree
commit 9fbcdaf9e2c2eb77477d7acb2501db59b946793e
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Fri Mar 6 08:42:50 2009 -0500
Add metadata
commit 391d35e39b937fe9262b8300a6ad3a985bd66584
Author: root <root@devel.(none)>
Date: Fri Feb 27 17:14:16 2009 -0500
fix Manifest
commit b00615d22b9a7f812e10a225b64c241d474958f7
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Fri Feb 27 07:33:00 2009 -0500
New package sci-biology/bowtie