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dev-python/protenix

A trainable PyTorch reproduction of AlphaFold 3.

Screenshots

  • protenix-0.7.3
    ~amd64 ~x86
    python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: Apache 2.0 License   
    Overlay: pypi

Runtime Dependencies

protenix-0.7.3





dev-python/torch[python_targets_python3_11
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dev-python/torchvision[python_targets_python3_11
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dev-python/torchaudio[python_targets_python3_11
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dev-python/cuequivariance-ops-torch-cu12[python_targets_python3_11
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dev-python/cuequivariance-torch[python_targets_python3_11
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>=dev-python/scipy-1.9.0[python_targets_python3_11
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dev-python/ml-collections[python_targets_python3_11
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~dev-python/tqdm-4.67.1[python_targets_python3_11
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~dev-python/pandas-2.3.1[python_targets_python3_11
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dev-python/dm-tree[python_targets_python3_11
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~dev-python/pyyaml-6.0.2[python_targets_python3_11
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~dev-python/matplotlib-3.10.5[python_targets_python3_11
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~dev-python/ipywidgets-8.1.7[python_targets_python3_11
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dev-python/py3Dmol[python_targets_python3_11
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dev-python/rdkit[python_targets_python3_11
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dev-python/biopython[python_targets_python3_11
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dev-python/biotite[python_targets_python3_11
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dev-python/modelcif[python_targets_python3_11
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dev-python/gemmi[python_targets_python3_11
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dev-python/pdbeccdutils[python_targets_python3_11
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dev-python/fair-esm[python_targets_python3_11
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~dev-python/scikit-learn-1.7.1[python_targets_python3_11
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dev-python/scikit-learn-extra[python_targets_python3_11
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dev-python/deepspeed[python_targets_python3_11
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>=dev-python/pydantic-2.0.0[python_targets_python3_11
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dev-python/triton[python_targets_python3_11
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dev-python/optree[python_targets_python3_11
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~dev-python/protobuf-6.31.1[python_targets_python3_11
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dev-python/icecream[python_targets_python3_11
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~dev-python/ipdb-0.13.13[python_targets_python3_11
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dev-python/wandb[python_targets_python3_11
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dev-python/posix-ipc[python_targets_python3_11
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~dev-python/numpy-1.26.4[python_targets_python3_11
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python_targets_python3_11?
      ( dev-lang/python:3.11 )

python_targets_python3_12?
      ( dev-lang/python:3.12 )

python_targets_python3_13?
      ( dev-lang/python:3.13 )

python_targets_python3_14?
      ( dev-lang/python:3.14 )