dev-python/protenix
A trainable PyTorch reproduction of AlphaFold 3.
Runtime Dependencies
protenix-0.7.3
dev-python/torch[python_targets_python3_11
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dev-python/torchvision[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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dev-python/torchaudio[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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dev-python/cuequivariance-ops-torch-cu12[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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dev-python/cuequivariance-torch[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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>=dev-python/scipy-1.9.0[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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dev-python/ml-collections[python_targets_python3_11
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~dev-python/tqdm-4.67.1[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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~dev-python/pandas-2.3.1[python_targets_python3_11
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,python_targets_python3_12
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dev-python/dm-tree[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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~dev-python/pyyaml-6.0.2[python_targets_python3_11
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,python_targets_python3_12
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~dev-python/matplotlib-3.10.5[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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~dev-python/ipywidgets-8.1.7[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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dev-python/py3Dmol[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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dev-python/rdkit[python_targets_python3_11
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dev-python/biopython[python_targets_python3_11
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,python_targets_python3_13
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dev-python/biotite[python_targets_python3_11
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dev-python/modelcif[python_targets_python3_11
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dev-python/gemmi[python_targets_python3_11
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dev-python/pdbeccdutils[python_targets_python3_11
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dev-python/fair-esm[python_targets_python3_11
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,python_targets_python3_13
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,python_targets_python3_14
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~dev-python/scikit-learn-1.7.1[python_targets_python3_11
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dev-python/scikit-learn-extra[python_targets_python3_11
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dev-python/deepspeed[python_targets_python3_11
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>=dev-python/pydantic-2.0.0[python_targets_python3_11
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dev-python/triton[python_targets_python3_11
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dev-python/optree[python_targets_python3_11
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~dev-python/protobuf-6.31.1[python_targets_python3_11
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dev-python/icecream[python_targets_python3_11
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,python_targets_python3_12
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~dev-python/ipdb-0.13.13[python_targets_python3_11
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dev-python/wandb[python_targets_python3_11
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dev-python/posix-ipc[python_targets_python3_11
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~dev-python/numpy-1.26.4[python_targets_python3_11
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python_targets_python3_11?
( dev-lang/python:3.11 )
python_targets_python3_12?
( dev-lang/python:3.12 )
python_targets_python3_13?
( dev-lang/python:3.13 )
python_targets_python3_14?
( dev-lang/python:3.14 )


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