commit 14b1dbd3fe67cddaf19c0502199733077cbd776b
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 15:25:07 2021 +0100

sci-biology/sga: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 8171b99830c37a7ceb1fed36d3cf8f2eb70d6d98
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Fri Jan 10 17:12:25 2020 +0100

sci-biology/sga: fix typo

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>

commit 2a587647f03490b80841358dfed7deb62cfe3097
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jan 25 20:52:27 2018 +0100

sci-biology/sga: add missing RDEPEND, more comments

Package-Manager: Portage-2.3.19, Repoman-2.3.6

commit 1c723baf788de9babc310c1988d63347f4429f43
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Jan 20 22:36:54 2018 +0100

sci-biology/sga: convert git:// to https://

Package-Manager: Portage-2.3.19, Repoman-2.3.6

commit e55632f5cb0b064a02cdf3d5e5189de03b540927
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jan 10 16:47:00 2018 +0100

sci-biology/sga: respect EPREFIX

Package-Manager: Portage-2.3.19, Repoman-2.3.6

commit ddee33dd856818debfc6c27809e224753bc8a494
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jan 10 15:56:09 2018 +0100

sci-biology/sga: also install needed *.preqc files

These files are typically needed for preqc analysis.
See https://github.com/jts/sga/wiki/preqc for a typical
use case.

Package-Manager: Portage-2.3.19, Repoman-2.3.6

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a84e4aa7f75897685dd1aa844aca28c80eb2a642
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Apr 10 13:27:58 2016 +0200

sci-biology/sga: compilation against bamtools does not work, see link

Package-Manager: portage-2.2.28

commit be0a658cc1a5ece410424fb184174399f9ff1a3e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Apr 10 11:55:24 2016 +0200

sci-biology/sga: move optional runtime deps to RDEPEND

Package-Manager: portage-2.2.28

commit 293cc646066232a16190180c93e6e52b569924aa
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Apr 8 21:10:06 2016 +0200

sci-biology/sga: improve package description

Package-Manager: portage-2.2.28

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6ab11cecb4abbedda99c81847ad300601de345bc
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Sep 23 14:47:53 2015 +0200

Use default functions

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 39e5299cb3cf0ff5a74be740057581675e9b10a8
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Jun 5 13:13:14 2015 +0200

sci-biology/sga: Add github to remote-id in metadata.xml

Package-Manager: portage-2.2.20

commit 3a9a8985f4975eca4af6be847be3c0955beaa344
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Mon Feb 9 10:06:46 2015 +0100

sci-biology/sga-9999: Switch from git-2 to git-r3; Cleanup; Add missing die

commit 2e6bdb2872ef38eadf82d56d0728871d7da3dad9
Author: Jauhien Piatlicki <jauhien@gentoo.org>
Date: Fri Sep 5 13:49:31 2014 +0200

sci-biology/sga: silence repoman

commit 9ce7d7d02ffa5ea884d926a61506108d5db723a5
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 24 02:14:56 2014 +0100

sci-biology/sga: new package; forces its own optimization flags but works fine