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sci-biology/pairagon

HMM-based cDNA to genome aligner

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ChangeLog

commit 30c4286d68a01ee103a86bb5d998c0039290b9dd
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:31:52 2021 +0100

sci-biology/pairagon: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit d5d8cc85ba517280e18f4b6b79d61983e35f1daf
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 11:24:24 2021 +0100

sci-biology/pairagon: fix fetching

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 4bc9cc3e0c3601751f67183b64405caf98191ec8
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:39:02 2017 +0200

sci-biology/pairagon: Fix double-prefix

Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702
Package-Manager: Portage-2.3.8, Repoman-2.3.3

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 95cb8f2e55c57dbc3c2c0d47ac9c98148e728823
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 15:11:27 2016 +0200

sci-biology/pairagon: try to avoid 'emake DESTDIR=/usr install'

Package-Manager: portage-2.2.28

commit fd1b1f6eb93bbde7c06b9d12779290bd60af9c61
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 14:59:55 2016 +0200

sci-biology/pairagon: fix PERL5INC

Package-Manager: portage-2.2.28

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3d121e03a40d2858ee3715abc8553960c2877c3f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 18 01:33:35 2015 +0200

sci-biology/pairagon: fixed installation of perl-related files

Package-Manager: portage-2.2.18

commit bba46880fc2e9fd6af8a92949d4a664e856f4dbb
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 19 11:36:38 2015 +0100

removing KEYWORDS until the perl files are installed to some other place. At the moment I get: 'perl-module.eclass: Suspicious environment values found. PERL5LIB="/usr/lib64/perl5/vendor_perl/5.18.2/pairagon"'

Package-Manager: portage-2.2.15

commit bcb9a5d452923bb22ec34d016db972ccb31b080f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 5 20:58:57 2015 +0100

new package

Package-Manager: portage-2.2.15