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sci-biology/hisat2

Align DNA reads to a population of genomes

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  • hisat2-2.2.1
    ~amd64 ~x86
    cpu_flags_x86_sse2 python_targets_python3_10 python_targets_python3_11

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    Overlay: science

ChangeLog

commit 17dc620f2e5c13aea2fbe89236f9dffa899cb2e2
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:23:29 2023 +0200

sci-biology/hisat2: disable py3.9

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit a2510336fc30abbe7678120d6df4dabe9043d4b5
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:23:08 2023 -0400

sci-biology/hisat2: update EAPI 7 -> 8

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 4a09c787c1cebef14bc0400404207920fc8d93b5
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:16:30 2023 -0400

sci-biology/hisat2: update HOMEPAGE

Signed-off-by: Horea Christian <chr@chymera.eu>

commit a1945ac9b929f5720f2df22b7866dbc980fe5f4c
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 13:08:00 2021 +0100

sci-biology/hisat2: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit c9419e0ec2cbc178aa1df6cfe599808fec40d1c8
Author: Sam James <sam@gentoo.org>
Date: Fri Feb 12 21:40:09 2021 +0000

*/*: drop obsolete python_targets_python3_6

Hopefully got them all:
* find . | grep -i .ebuild | xargs perl -p -i -e "s/6\.\.9/7\.\.9/"
* find . | grep -i .ebuild | xargs perl -p -i -e "s/3_{6,7/3_{7/"

Signed-off-by: Sam James <sam@gentoo.org>

commit eca3014fae9e6a22196e2cf57f270b3ad46f591a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:20:31 2021 +0100

sci-biology/hisat2: depend on unzip

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 18242e80e4a76451d4559ec3c788304525f34446
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Fri Aug 7 14:15:21 2020 +0200

sci-biology/hisat2: version bump

Package-Manager: Portage-2.3.100, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 869844b94cd59135cc3a85c0a42aafcf815f413e
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Mar 26 10:18:45 2017 +0100

sci-biology/hisat2: Properly support python

Drop stray CVS header line

Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 0765721b800e099f0e7d29d715fc39047d1b0f65
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 1 12:28:52 2017 +0100

sci-biology/hisat2: new package

Package-Manager: Portage-2.3.3, Repoman-2.3.1