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sci-biology/cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads

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  • cutadapt-4.9
    ~amd64
    test test python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 python_targets_python3_13

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    Overlay: science

ChangeLog

commit fd08b2a5d7d48adea7a3f1d07d3783c15ce0f24b
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Sun Sep 29 16:31:30 2024 +0300

sci-biology/cutadapt: new package, add 4.9

Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

commit ab1e584f381294aa4c62bfb13470c845f2f5c2ec
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:07:57 2023 +0200

sci-biology/cutadapt: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit baf55ad9bd948fa0762f6251d7388f3226c9920d
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Fri May 21 02:01:45 2021 +0000

sci-biology/cutadapt: version bump to 3.3

Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit c9419e0ec2cbc178aa1df6cfe599808fec40d1c8
Author: Sam James <sam@gentoo.org>
Date: Fri Feb 12 21:40:09 2021 +0000

*/*: drop obsolete python_targets_python3_6

Hopefully got them all:
* find . | grep -i .ebuild | xargs perl -p -i -e "s/6\.\.9/7\.\.9/"
* find . | grep -i .ebuild | xargs perl -p -i -e "s/3_{6,7/3_{7/"

Signed-off-by: Sam James <sam@gentoo.org>

commit f6e23f9d9c7a74f395fa8b98bc399c8296bd40ff
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Mon Sep 21 20:19:03 2020 -0400

sci-biology/cutadapt: drop old version

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 01005268a3dff26c967c8dcd780a573b4e75f9ae
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Mon Sep 21 20:18:27 2020 -0400

sci-biology/cutadapt: drop live version

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 3b6605165f97987a79ac9103821765e835af4d17
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Mon Sep 21 20:17:04 2020 -0400

sci-biology/cutadapt: update to latest

Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit e6074ac17b14d6d2baf11ae676d1d65132f2521b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun May 21 22:06:20 2017 +0200

sci-biology/cutadapt: add recent new dependency

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6be3a6751679b0fbff675ab05b677d19664963a5
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 15 21:38:21 2016 +0100

sci-biology/cutadapt: version bump and remove old ones; update HOMEPAGE

Package-Manager: portage-2.2.26

commit 160fcc1ada2d510b4b5ebb171d08b3e367d707bf
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Feb 14 18:28:16 2016 +0100

sci-biology/cutadapt: Bump to EAPI=6

* Use git-r3.eclass * drop multiversion code

Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 824f62a4939472d0f85a6602a2ae461d11bd034b
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Jun 3 12:47:11 2015 +0200

Add pypi remote-id to metadata.xml

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 53c3abab592fb0a0fcd3690917748fe901d9889e
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Apr 8 11:27:07 2015 +0200

Drop old python implementations

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bfe36351e943ded8d08f95ea4c8df7a62be72f86
Author: Jauhien Piatlicki <jauhien@gentoo.org>
Date: Thu Sep 11 17:38:36 2014 +0200

sci-biology/cutadapt: version bump

commit 4b04b146b2efedc84b0f1b1b2739b663d32a1fcf
Author: Jauhien Piatlicki <jauhien@gentoo.org>
Date: Thu Sep 11 17:34:49 2014 +0200

sci-biology/cutadapt: fix SRC_URI

commit db87525a418029e3903315e6c4e74c28e385999a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 25 11:46:02 2014 +0100

sci-biology/cutadapt: switch to use newer source code location, add support for github snapshots, version bump

commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100

Sanitize ebuild header

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 828a5d1a7a73fe81b7dfc5d545535234ed1f2d90
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 20 13:28:21 2014 +0100

Fix typo BUmp > Bump

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a865b1f4a46d85ee2d5770c100642bb24141b1d6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 16 10:00:24 2013 +0200

sci-biology/cutadapt: Version BUmp; BUmp to EAPI5 and distutils-r1.eclass

Package-Manager: portage-2.2.0_alpha179

commit eb39645b99fda8b346992ac6eaa4a3e90d8b0317
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 3 02:15:23 2012 +0100

sci-biology/cutadapt: new package

(Portage version: 2.1.10.49/git/Linux x86_64, unsigned Manifest commit)