sci-biology/bismark
Map bisulfite converted sequence reads and cytosine methylation states
ChangeLog
commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2bb54c0271841f6602d46309f86b47050557bf8f
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:23:12 2021 +0100
sci-biology/bismark: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit b56ce20506d4fe815bbf3ceef0c39e387023b63a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 10:42:54 2021 +0100
sci-biology/bismark: drop old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit e45541df91e0f201695648836bd4b480568c9da4
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 10:42:33 2021 +0100
sci-biology/bismark: version bump 0.23.0, EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 1e04d5868f177eb639f03889b59d2cba00206578
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 21:01:49 2017 +0000
Second try to clean spaces in metadata.xml
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 59caf0deb45063caeff69aae22626f09b41f0b8f
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:30:57 2017 +0000
sci-biology/bismark: Fix repoman warnings
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 01a5062038a8bc55319bb81222c9f1bcd369cb20
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:27:18 2017 +0000
Shorten all DESCRIPTION to <80 chars
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e1b72f907d6de13465c6d1f84a6cd588f22dacfc
Author: Linlin Yan <yanlinlin82@gmail.com>
Date: Sun Dec 21 20:02:06 2014 +0800
sci-biology/bismark: Remove 'dodir' and break long lines.
commit 1ecaad76c11f5dce7a466addc22a17fe325a06b4
Author: Linlin Yan <yanlinlin82@gmail.com>
Date: Sat Dec 20 16:14:04 2014 +0800
sci-biology/bismark: Add new package.
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2bb54c0271841f6602d46309f86b47050557bf8f
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:23:12 2021 +0100
sci-biology/bismark: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit b56ce20506d4fe815bbf3ceef0c39e387023b63a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 10:42:54 2021 +0100
sci-biology/bismark: drop old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit e45541df91e0f201695648836bd4b480568c9da4
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 10:42:33 2021 +0100
sci-biology/bismark: version bump 0.23.0, EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 1e04d5868f177eb639f03889b59d2cba00206578
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 21:01:49 2017 +0000
Second try to clean spaces in metadata.xml
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 59caf0deb45063caeff69aae22626f09b41f0b8f
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:30:57 2017 +0000
sci-biology/bismark: Fix repoman warnings
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 01a5062038a8bc55319bb81222c9f1bcd369cb20
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:27:18 2017 +0000
Shorten all DESCRIPTION to <80 chars
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e1b72f907d6de13465c6d1f84a6cd588f22dacfc
Author: Linlin Yan <yanlinlin82@gmail.com>
Date: Sun Dec 21 20:02:06 2014 +0800
sci-biology/bismark: Remove 'dodir' and break long lines.
commit 1ecaad76c11f5dce7a466addc22a17fe325a06b4
Author: Linlin Yan <yanlinlin82@gmail.com>
Date: Sat Dec 20 16:14:04 2014 +0800
sci-biology/bismark: Add new package.