sci-biology/bamstats
A program to extract various information from BAM alignment files
ChangeLog
commit db98782e890b3cebf75a19b2da3a1bdcbee17fa4
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 12 06:28:08 2023 -0600
*/*: Remove [profile?] from ghc RDEPEND
This reverts commit b2f01bbf1333c88785109bebf75d49a3bd623727.
Adding [profile?] universally causes issues with exe-only packages with
no profile USE flag. This is better handled in the eclass.
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit a2f524e74d7e5e5000c1d057a74dcd7f4af7b43c
Author: hololeap <hololeap@users.noreply.github.com>
Date: Sat May 6 17:04:20 2023 -0600
*/*: Remove ~x86 (and related) from KEYWORDS
x86 is mostly untested, and even building a subset of ::haskell
revealed failing tests which pass on amd64.
With the new behavior of hackport to only add ARCH to KEYWORDS, there
will be CI failures if a package has ~x86 removed but not from its
revdep tree as well. The only sensible mitigation is to remove ~x86
tree-wide until we have a dedicated tester willing to fix current bugs.
See: https://github.com/snoyberg/mono-traversable/issues/210
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit b2f01bbf1333c88785109bebf75d49a3bd623727
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 5 15:53:40 2023 -0600
*/*: Add [profile?] to ghc RDEPEND
Any package that depends on 'base' will require the 'base' profiling
libs when profiling is enabled. Because virtually every package depends
on 'base', it makes sense to add [profile?] universally to
'dev-lang/ghc' in RDEPEND.
Reported-by: Filip Kszczot <filip@kszczot.pl>
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit c4be7b7b6401eccd951793efa3fa8d8e871be391
Author: Harri Nieminen <moiman@posteo.net>
Date: Thu Mar 30 08:52:17 2023 +0300
sci-biology/bamstats: update DESCRIPTION
Signed-off-by: Harri Nieminen <moiman@posteo.net>
commit 9672ee12c9c489f9e5bfdee329a4e6aed692fe4d
Author: Sam James <sam@gentoo.org>
Date: Sat Jul 30 06:55:18 2022 +0100
*/*: fix https->https in metadatd dtd
Newer hackport fixes this (in git, not tagged yet).
Signed-off-by: Sam James <sam@gentoo.org>
commit 06b7143cb3d52e23e32d74abe70916217ef72a75
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sun Jul 25 13:34:10 2021 +0100
sci-biology/bamstats: update to EAPI=8
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 98d781870939c08cc2f89b5785d92a039238b386
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sun Jul 25 09:47:51 2021 +0100
*/*: drop obsolete CABAL_FEATURES=bin
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 4f4c9666e6d0045781b5124c0443ea7603f9c33d
Author: Wolfgang E. Sanyer <WolfgangESanyer@gmail.com>
Date: Tue Feb 16 23:56:16 2021 -0500
sci-biology/bamstats: remove redundant longdescription from metadata
Signed-off-by: Wolfgang E. Sanyer <WolfgangESanyer@gmail.com>
commit 3d16013c65cc8986c7537d76ed3a2855e978d057
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sat Nov 23 15:39:53 2019 +0000
*/*: Inline mirror://hackage and update URIs
Follow ::gentoo commit 2a2e66a9407205f18
("*/*: Inline mirror://hackage and update URIs ")
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 2a94f64d40e69b69ddfa1b5da7906d17009e5e6f
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Fri Nov 24 09:25:20 2017 +0000
refresh Manifests
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 1a6ba469382ab24f8b77b4ff3b043b6e2ed68306
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Tue Feb 28 21:38:05 2017 +0000
follow ::gentoo in removing '# $Id$' headers
Done as
$ sed -i */*/*.ebuild -e '/^# \$Id\$$/d'
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit a5b0b079b85f020d0b04c531175324ca3bce1b36
Author: Sergei Trofimovich <siarheit@google.com>
Date: Sun May 8 14:54:36 2016 +0100
sci-biology/bamstats: new package, asked by Martin MOKREJŠ
Package-Manager: portage-2.2.28
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 12 06:28:08 2023 -0600
*/*: Remove [profile?] from ghc RDEPEND
This reverts commit b2f01bbf1333c88785109bebf75d49a3bd623727.
Adding [profile?] universally causes issues with exe-only packages with
no profile USE flag. This is better handled in the eclass.
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit a2f524e74d7e5e5000c1d057a74dcd7f4af7b43c
Author: hololeap <hololeap@users.noreply.github.com>
Date: Sat May 6 17:04:20 2023 -0600
*/*: Remove ~x86 (and related) from KEYWORDS
x86 is mostly untested, and even building a subset of ::haskell
revealed failing tests which pass on amd64.
With the new behavior of hackport to only add ARCH to KEYWORDS, there
will be CI failures if a package has ~x86 removed but not from its
revdep tree as well. The only sensible mitigation is to remove ~x86
tree-wide until we have a dedicated tester willing to fix current bugs.
See: https://github.com/snoyberg/mono-traversable/issues/210
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit b2f01bbf1333c88785109bebf75d49a3bd623727
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 5 15:53:40 2023 -0600
*/*: Add [profile?] to ghc RDEPEND
Any package that depends on 'base' will require the 'base' profiling
libs when profiling is enabled. Because virtually every package depends
on 'base', it makes sense to add [profile?] universally to
'dev-lang/ghc' in RDEPEND.
Reported-by: Filip Kszczot <filip@kszczot.pl>
Signed-off-by: hololeap <hololeap@users.noreply.github.com>
commit c4be7b7b6401eccd951793efa3fa8d8e871be391
Author: Harri Nieminen <moiman@posteo.net>
Date: Thu Mar 30 08:52:17 2023 +0300
sci-biology/bamstats: update DESCRIPTION
Signed-off-by: Harri Nieminen <moiman@posteo.net>
commit 9672ee12c9c489f9e5bfdee329a4e6aed692fe4d
Author: Sam James <sam@gentoo.org>
Date: Sat Jul 30 06:55:18 2022 +0100
*/*: fix https->https in metadatd dtd
Newer hackport fixes this (in git, not tagged yet).
Signed-off-by: Sam James <sam@gentoo.org>
commit 06b7143cb3d52e23e32d74abe70916217ef72a75
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sun Jul 25 13:34:10 2021 +0100
sci-biology/bamstats: update to EAPI=8
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 98d781870939c08cc2f89b5785d92a039238b386
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sun Jul 25 09:47:51 2021 +0100
*/*: drop obsolete CABAL_FEATURES=bin
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 4f4c9666e6d0045781b5124c0443ea7603f9c33d
Author: Wolfgang E. Sanyer <WolfgangESanyer@gmail.com>
Date: Tue Feb 16 23:56:16 2021 -0500
sci-biology/bamstats: remove redundant longdescription from metadata
Signed-off-by: Wolfgang E. Sanyer <WolfgangESanyer@gmail.com>
commit 3d16013c65cc8986c7537d76ed3a2855e978d057
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sat Nov 23 15:39:53 2019 +0000
*/*: Inline mirror://hackage and update URIs
Follow ::gentoo commit 2a2e66a9407205f18
("*/*: Inline mirror://hackage and update URIs ")
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 2a94f64d40e69b69ddfa1b5da7906d17009e5e6f
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Fri Nov 24 09:25:20 2017 +0000
refresh Manifests
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit 1a6ba469382ab24f8b77b4ff3b043b6e2ed68306
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Tue Feb 28 21:38:05 2017 +0000
follow ::gentoo in removing '# $Id$' headers
Done as
$ sed -i */*/*.ebuild -e '/^# \$Id\$$/d'
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
commit a5b0b079b85f020d0b04c531175324ca3bce1b36
Author: Sergei Trofimovich <siarheit@google.com>
Date: Sun May 8 14:54:36 2016 +0100
sci-biology/bamstats: new package, asked by Martin MOKREJŠ
Package-Manager: portage-2.2.28