commit aa102bb00d9c82cc16c15984c33432b54fd4dd5e
Author: Paul Zander <negril.nx+gentoo@gmail.com>
Date: Thu Dec 12 12:53:36 2024 +0100

move {sys-devel,llvm-core}/llvm

Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>

commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500

add github remote-id when possible

Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit ae40741d8d845180d469a40844d672e76b0c3a76
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:22:19 2021 +0100

sci-biology/bamql: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit f96c7ec91d0add7dfef7af06a4d81bc97cf0b7d9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 26 00:56:31 2019 +0100

sci-biology/bamql: switch to `$(use_enable ...)`

https://github.com/gentoo/sci/issues/907#issuecomment-476420962

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 732c892485ba23fb419d064b28cba2b0dd982f90
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 26 00:52:45 2019 +0100

sci-biology/bamql: remove dependency on llvm static libs

Thanks for the patch and guidance to François Bissey:
https://github.com/gentoo/sci/issues/907

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 47b0727a452b00a0552a3094eff49fc44a2ea9fe
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 25 09:40:46 2019 +0100

sci-biology/bamql: bump to EAPI7

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 87e5a20b2aa7f097ab01530ee9997b611e10808b
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 25 09:25:37 2019 +0100

sci-biology/bamql: bump to version with less greedy LLVM linking

The https://github.com/BoutrosLaboratory/bamql/blob/master/m4/ax_llvm.m4#L31
forces preference for static libs. The code was improved by Andre
Masella. Although the original code is based on ax_llvm.m4 which
is 4 versions behind current version at
http://git.savannah.gnu.org/gitweb/?p=autoconf-archive.git;a=blob_plain;f=m4/ax_llvm.m4
it does better job at the moment.

https://github.com/BoutrosLaboratory/bamql/issues/14#issuecomment-475947032

Many thanks to François Bissey (@kiwifb) and Andre Masella (@apmasell)
for discussion and Andre for the changes in
https://github.com/BoutrosLaboratory/bamql/commit/9441772
which enable use to overcome the requirement for static libs and
proceed with shared versions using:
`--enable-static=no --enable-static-llvm=no`

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 565f9b0c0ef3c2c6917d27a17495dbc279bc92de
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 23 16:01:39 2019 +0100

sci-biology/bamql: add IUSE="static-libs"

Provided one specifies `--enable-static=no --enable-static-llvm=no` the
patch in
https://github.com/BoutrosLaboratory/bamql/commit/94417720bc7653a90cd9edd932ba6ba52d7bb89b
is really needed (as these two args are enough to compile bamql-1.6 and
llvm with only shared libs).

See https://github.com/BoutrosLaboratory/bamql/issues/14

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 35f7bda074493d740f250c2b434f66636082272d
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue May 1 07:55:21 2018 +0200

sci-biology/bamql: add live ebuild

Package-Manager: Portage-2.3.31, Repoman-2.3.9

commit ee649bc48962c51c37ae92acdd85e65f480e48bf
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 31 01:13:32 2018 +0200

sci-biology/bamql: new package

Package-Manager: Portage-2.3.24, Repoman-2.3.6