Gentoo Portage Overlays - sci-biology/afni

sci-biology/afni

Advanced Normalitazion Tools for neuroimaging

Screenshots

http://stnava.github.io/ANTs/

afni-9999

test whirlgif python_targets_python3_10 python_targets_python3_11

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Browse License: GPL-3+

Overlay: chymeric

afni-24.1.16

~amd64 ~x86

test whirlgif python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 python_targets_python3_13

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Browse License: GPL-3+

Overlay: science

afni-24.1.15

~amd64 ~x86

test whirlgif python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 python_targets_python3_13

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Browse License: GPL-3+

Overlay: science

afni-24.0.08-r3

~amd64 ~x86

test whirlgif python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 python_targets_python3_13

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Browse License: GPL-3+

Overlay: science

afni-23.3.13_p20231212

~amd64

test

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Browse License: GPL-3+

Overlay: chymeric

ChangeLog USE Flags Dependencies Reverse Deps Related Bugs

ChangeLog

commit a349d6db783132301ecf481c53ddddc13e295a0b
Author: Paul Zander <negril.nx+gentoo@gmail.com>
Date: Thu Dec 12 12:53:37 2024 +0100

move sys-libs/libomp:llvm-runtimes/openmp

Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>

commit aa102bb00d9c82cc16c15984c33432b54fd4dd5e
Author: Paul Zander <negril.nx+gentoo@gmail.com>
Date: Thu Dec 12 12:53:36 2024 +0100

move {sys-devel,llvm-core}/llvm

Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com>

commit 5307342730267714f7019d62f77b2d9bf7624d8c
Author: Horea Christian <chr@chymera.eu>
Date: Thu Jun 6 19:04:29 2024 -0400

sci-biology/afni: add 24.1.15, 24.1.16

Signed-off-by: Horea Christian <chr@chymera.eu>

commit be6977739d20a779f291c66eefb9cc896ff2e4e0
Author: Horea Christian <chr@chymera.eu>
Date: Thu May 30 17:55:24 2024 -0400

sci-biology/afni: drop 24.0.04-r1, 24.0.08-r1, 24.0.08-r2

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 6d9b772f10ed51682604e5c1cb6f9c278a5c6c72
Author: Horea Christian <chr@chymera.eu>
Date: Wed May 29 04:31:29 2024 -0400

sci-biology/afni: correct version annotation

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 0075b0aa4f9993e0bc54e9d627329332555d16e0
Author: Horea Christian <chr@chymera.eu>
Date: Tue May 28 13:10:35 2024 -0400

sci-biology/afni: env variable for AFNI data

Signed-off-by: Horea Christian <chr@chymera.eu>

commit b5ce4a1154c05787fe20c3074b2bc91f5146bacf
Author: Horea Christian <chr@chymera.eu>
Date: Fri May 24 09:49:20 2024 -0400

sci-biology/afni: update DESCRIPTION, HOMEPAGE

Signed-off-by: Horea Christian <chr@chymera.eu>

commit bf635e42b9e981623432224920b21940f4feda56
Author: Horea Christian <chr@chymera.eu>
Date: Fri Mar 22 17:18:40 2024 -0400

sci-biology/afni: removed deprecated deps

Signed-off-by: Horea Christian <chr@chymera.eu>

commit fa3769352840642eb37e6125ee2fa69fef802cd4
Author: Horea Christian <chr@chymera.eu>
Date: Wed Feb 28 18:30:07 2024 -0500

sci-biology/afni: drop 20.1.16, 20.3.03, 22.0.21

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 19c71d97b19391b8797187494008509914db24ed
Author: Horea Christian <chr@chymera.eu>
Date: Wed Feb 28 17:43:04 2024 -0500

sci-biology/afni: add 24.0.04, 24.0.08

Signed-off-by: Horea Christian <chr@chymera.eu>

commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500

add github remote-id when possible

Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit b8c6e80e563fc1112e02055327a5819a2844cea9
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Mon May 2 14:22:19 2022 +0200

*/*: virtual/jpeg deprecation

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 48589a716ae0690d1f7968fa42eb3c8686cef7a8
Author: Horea Christian <chr@chymera.eu>
Date: Sun Apr 3 04:13:53 2022 -0400

sci-biology/afni: version patches are identical

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 65c6f547d13f0bf646544e6aef04a70e0d8976c3
Author: Horea Christian <chr@chymera.eu>
Date: Sun Apr 3 04:11:12 2022 -0400

sci-biology/afni: corrected patch application

ebuild still fails, though, log included in comment and reposited here:
https://ppb.chymera.eu/4223de.log

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

commit e076bdf17bc9d27acebb0294bc5fab198ffd91f5
Author: Horea Christian <chr@chymera.eu>
Date: Fri Apr 1 11:41:23 2022 -0400

sci-biology/afni: bump ebuild still fails

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 34f54dc027e97c6df729cede84253f6555e6c45e
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Apr 1 11:05:26 2022 +0200

sci-biology/afni: add 22.0.21, drop 22.0.03

Restore patch dropping py2.7 dep

TODO: make build system respect *FLAGS
TODO: Switch to cmake? This is non-trivial because the
cmake build system wants to fetch deps from the internet

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit e3ed6312407f673e0d8d544fd54d625b6492a27a
Author: Horea Christian <chr@chymera.eu>
Date: Fri Apr 1 04:22:33 2022 -0400

sci-biology/afni: cleaned up whitespace and unneeded code

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

commit da45c12e15c1bfde33d4c8e0919eccec25b426b8
Author: Horea Christian <chr@chymera.eu>
Date: Fri Apr 1 03:48:43 2022 -0400

sci-biology/afni: reinstated working versions

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 7c2d62f11603cc64279a72f03d2b7b18d61b9de0
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 16:34:00 2022 +0100

sci-biology/afni: bump to version 22.0.03

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 835569010a951b4653385ba43775bd1ad19cf418
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:21:23 2021 +0100

sci-biology/afni: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit dad08138c6043026d67cf7e54b610a084a9e6780
Author: Horea Christian <chr@chymera.eu>
Date: Sun Jan 31 22:52:44 2021 -0500

sci-biology/afni: added missing patch file

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 5c191a775d0dedfe49d26f2bc38342791f8750b7
Author: Horea Christian <chr@chymera.eu>
Date: Sat Jan 2 22:46:05 2021 -0500

sci-biology/afni: version bump 20.3.03

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>

commit f225be3cfea18d5fedcc3c7f77f402effa123dea
Author: Horea Christian <chr@chymera.eu>
Date: Sat Jan 2 22:44:38 2021 -0500

sci-biology/afni: applying patch at start of prepare phase

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 3e76637df474b35297300498482d198b0ef70de8
Author: Horea Christian <chr@chymera.eu>
Date: Fri Dec 18 03:15:30 2020 -0500

Updated developer email address.

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 83fd8b496d322f3f6130ff251f0567486f35a14a
Author: Horea Christian <chr@chymera.eu>
Date: Sat Oct 24 00:31:12 2020 -0400

sci-biology/afni: fixed build issues for systems missing python 2.7

Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 6922e6ca034d8d4cd13f5101825de6ec930fb276
Author: Horea Christian <chr@chymera.eu>
Date: Tue Oct 20 12:23:22 2020 -0400

Updated developer email address.

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 644434c14f22d95edcf230733955076ecab0cf31
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jun 19 12:01:29 2020 -0400

sci-biology/afni: version bump 20.1.16

Package-Manager: Portage-2.3.101, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>

commit ab307a97b24eb48f5e7c7e7570a0486d07111148
Author: Horea Christian <chr@chymera.eu>
Date: Thu Jan 16 19:27:52 2020 +0100

sci-biology/afni: deprecated old hard-masked versions

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr@chymera.eu>

commit b3db3a9c0d4b6e6a7c24003a12eef93e4a79c73d
Author: Horea Christian <chr@chymera.eu>
Date: Mon Nov 25 19:30:38 2019 +0100

sci-biology/afni: version bump 19.3.12 (non-masked version)

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr@chymera.eu>

commit d4ca0e569b7e7f01c39bd08adb2b8c42efa96be0
Author: Horea Christian <chr@chymera.eu>
Date: Thu Apr 25 10:48:41 2019 +0200

sci-biology/afni: dependency update

Package-Manager: Portage-2.3.63, Repoman-2.3.12
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 9c3493015edd58f073ee3d0493753721a04a7d6b
Author: Horea Christian <horea.christ@yandex.com>
Date: Sat Mar 2 19:05:25 2019 +0100

sci-biology/afni: version bump

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ@yandex.com>

commit 8536fe8cb8687e2b585d3f805affbf17971b9653
Author: Horea Christian <horea.christ@yandex.com>
Date: Tue Jun 26 03:16:34 2018 +0200

sci-biology/afni: Added unstable x86 keyword

Package-Manager: Portage-2.3.40, Repoman-2.3.9

commit d361c9c4a2380e2f918740463206ca430fe60e24
Author: Horea Christian <horea.christ@yandex.com>
Date: Mon Jun 25 03:10:25 2018 +0200

sci-biology/afni: new package

Package-Manager: Portage-2.3.40, Repoman-2.3.9