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sci-biology/SnpEff

SnpEff, SnpSift: Annotate SNP changes and predict effect in HGVS-compliant VCF

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commit b9e1397d441af5d9ea9e076f61719eadbabff069
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Thu Nov 7 15:24:35 2024 +0100

sci-*/*: remove dead java-ant-2 eclass

See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>

commit 843b1f675001ddf24cf56c5b0e9dcd3680111cef
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sun Jan 24 14:51:53 2021 +0100

sci-biology/SnpEff: fix install

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit a0e0a0d9d53e45889552358f44d6efe8f43bcec9
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 10:22:34 2021 +0100

sci-biology/SnpEff: fix fetching

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit a04795846141641b7608b245d7ae06d33d721985
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Dec 29 15:15:11 2020 +0100

*/* misc fixes to make repoman happier

- http to https where possible
- remove some blank lines
- quote unqouted variables
- fdo-mime to xdg-utils
- clean up profiles/
- clean up licenses

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/999
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 48b67e4f7b81d20f6f0454c1e329454991c0aa5b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Feb 20 23:50:36 2017 +0100

sci-biology/SnpEff: version bump

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 5fb831e8c3bcf4b192b96dcf018a558a86bd1581
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Dec 7 11:14:58 2016 +0100

sci-biology/SnpEff: fix installation on PREFIX

Package-Manager: portage-2.3.2

commit e5cf10b0eb4504480f9e6a26e4b11de229e3e37a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Dec 7 11:00:10 2016 +0100

sci-biology/SnpEff: version bump, may be moved to our main repo

Package-Manager: portage-2.3.2

commit 29d62487d6b5776402688fee78b2dbb47cdf3e5c
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Aug 1 14:43:59 2016 +0200

sci-biology/SnpEff: re-order dependencies, back to EAPI=5

Package-Manager: portage-2.3.0

commit 556f260e90750a3919e5fb0167d0ce7285f3d7ac
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Aug 1 00:14:49 2016 +0200

sci-biology/SnpEff: fix indentation

Package-Manager: portage-2.3.0

commit 84e0f638f095e67e26939f1f33c16c115745edca
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jul 27 10:56:40 2016 +0200

sci-biology/SnpEff: version bump

Package-Manager: portage-2.2.28

commit b39edea7ff9a3cd0e7f0b5986b60fd27a46a20cd
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Feb 14 18:17:02 2016 +0100

sci-biology/SnpEff: Bump to EAPI=6

* Clean multiverion code

Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit d8a45f03438c8ac2e2b7af8787a075bae0386ce3
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 12 08:52:45 2016 +0100

Fix metadata.xml for herd -> project transition

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 1a4dc5be8fd24487de1306cf68af5a7d507edb01
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Feb 10 14:28:39 2016 +0100

sci-biology/SnpEff: version bump

Package-Manager: portage-2.2.26