dev-python/pyprismatic
Python bindings for the Prismatic STEM simulation framework
ChangeLog
commit 946b3d5e6f85aa6d17632eb69d8c14152e056548
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 23:16:52 2026 +0200
*/*: normalize metadata.xml DTD URL and indent
Repo-wide sweep: 144 metadata.xml files updated to use the
https://www.gentoo.org/dtd/metadata.dtd DTD URL (was http://) and
2-space indentation (was tabs). Maintainer blocks left untouched —
the 2026-04-22 normalization sweep added <name> alongside <email>
where the maintainer was Ivan, but third-party maintainer entries
(lebedev.vasya@gmail.com, megagreener@gmail.com, brothermechanic@gmail.com,
etc.) keep their email-only blocks since we can't safely guess the
corresponding <name>.
pkgcheck stays silent on all metadata-* and maintainer-* checks.
commit 5db7d981962ce867a53e7c9f893077f652030376
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 16:24:34 2026 +0200
dev-python/pyprismatic: bump nvcc -arch to sm_75 on CUDA 13
Mirrors the sci-physics/prismatic CUDA 13 fix: the bundled CMakeLists.txt hard-codes
`-arch=sm_60`, which CUDA 13 rejects because compute capability < 7.5 was dropped.
Adds a src_prepare that, when CUDA_VERSION reported by the live cuda.h is >= 13000,
sed-replaces the line to `-arch=sm_75`. CUDA 12 systems keep the original sm_60.
Tested live with nvidia-cuda-toolkit-13.2.1: pyprismatic-2.0 USE=gpu builds and
`import pyprismatic` succeeds.
commit 0b54b7d9b325c875843cd3541cb936fb4248f47c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 13:53:29 2026 +0200
dev-python/pyprismatic: declare upstream numpy lower bound
Upstream setup.py for 2.0 declares install_requires=['numpy>=1.13.0'];
the ebuild was leaving the version unbounded. Tighten the lower bound.
h5py and scipy are intentionally kept in RDEPEND despite being absent
from upstream metadata: pyprismatic/process.py and __init__.py import
them directly.
commit 44e29ed04b834235689a4cb9760a712a31ec5b05
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Apr 24 20:13:03 2026 +0200
dev-python/pyprismatic: fix 2.0 build and declare missing Python deps
The ebuild didn't build against current ::gentoo and wouldn't import
even if it did. Fixes:
* cxx17-standard.patch: CMAKE_CXX_STANDARD 11 -> 17 (Boost 1.90 math
headers require it) plus NVCC_FLAGS_EXTRA -std=c++11 -> c++17 for
the gpu path.
* boost-bessel-qualify.patch: disambiguate cyl_bessel_k between
boost::math:: and C++17's std::cyl_bessel_k in projectedPotential.
* complex-literal.patch: std::complex<float> = 0.0 + 1.0i no longer
narrows silently under GCC 15; use the two-arg constructor.
Three patches are copies of the ones landed in sci-physics/prismatic
(same upstream source tree); packages own their own FILESDIR.
Ebuild cleanups:
* Drop unused debug / python / doc IUSE; the flags had no wiring.
* Move dev-build/cmake from RDEPEND to BDEPEND, move CUDA there too
under gpu? (build-time only).
* Drop the cargo-cult BUILD_DIR=$ override.
Runtime deps fix:
* Add dev-python/{numpy,h5py,scipy} via python_gen_cond_dep. These
were missing entirely -- import pyprismatic pulls them in via
process.py / fileio.py, so the previous ebuild would ImportError
at first use regardless of build success.
Tested on python3.13: core.so builds, loads, and exposes the go()
entry point. Full import pyprismatic blocked on this host by an
unrelated system-wide h5py/HDF5 ABI mismatch.
commit b91cd93a12cb39be1b4976cdc1af27ca13ce34e5
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 15:16:42 2026 +0200
*/*: bump PYTHON_COMPAT from python3_ to python3_
::gentoo has dropped python3.11 from most of the scientific Python
stack - scipy, pandas, ipython, sphinx, sympy, etc. all target
python3_ now. Overlay ebuilds still claiming python3_11
support therefore fail to resolve their PYTHON_USEDEP=[...,
python_targets_python3_11(-),...] clauses against those upstream
packages, which is the bulk of pkgcheck's NonsolvableDeps noise.
Sweep PYTHON_COMPAT across the overlay accordingly. Files touched
include 193 pure-python3 ebuilds plus 4 sci-libs/pycifrw ebuilds that
retain the python2_7 target. Commented-out COMPAT lines and one
ebuild using a custom $ array are left alone.
pkgcheck dropped from 710 to 475 lines after this change; specifically
NonsolvableDepsIn{Dev,Stable} fell from 391 to 182 combined.
Users on a python3.11 profile lose access to the updated versions in
this overlay, mirroring what ::gentoo already did to the rest of the
scientific stack.
Signed-off-by: Raukaan Cogbrother <cogbrother@raukaan.local>
commit 333a849082e704941d018a7f0b99678eda18904f
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 01:07:29 2026 +0200
*/*: bump PYTHON_COMPAT to python3_
Match the ::gentoo convention (main tree dropped 3.9 / 3.10 support
a while ago). Three mechanical substitutions:
- python3_ -> python3_ (189 ebuilds)
- python3_ -> python3_ (llvmlite)
- python2_7 python3_ -> python2_7 python3_ (pycifrw)
Leaves the legacy python2_7-only ebuilds and dev-python/cython
(special PYTHON_TESTED pattern on the 0.29 series) untouched.
commit a33d44fa70785ccc57ef09ca67745073c1881156
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sun Apr 19 14:51:22 2026 +0200
dev-python/pyprismatic: rename distfile to share with sci-physics/prismatic
commit f23ece73c4451e2377c17d8b90acb53bee608563
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 15 21:28:34 2026 +0100
*/*: UPD header, Happy New Year
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 7313b9aeadb331a92c46a2fbf9a31359ad288979
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 14:28:32 2025 +0100
dev-python/pyprismatic: styling
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit bd56ad8c4cfa96514317be4d851cb4fcbd6b8802
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 10:40:56 2025 +0100
*/*: adjusting python compat to 3.9 to 3.14
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 02fee3b133501e13cd97dc4acb029379621c8d56
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 01:05:20 2025 +0100
multiple styling corrections to make pkgscan happy
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 75d55441dbb2e55a7102e44b643e2e17cdfbc05d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Oct 17 21:58:20 2025 +0200
finally upd year to 2025 :)
commit 4e98d8e859ba751c01de3f76f3d3bf9fe9f7f5d2
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Sep 21 19:27:20 2025 +0100
prismatic
commit b451ac3b81ed540a5ce0bbef96d542cd2a2a0dcd
Author: istitov <istitov@github>
Date: Mon Feb 12 10:45:30 2024 +0100
upd copyright to 2024
commit 5b6b04a1d18b8ca4777209caaca0f9f8bb849432
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Feb 11 11:24:32 2024 +0000
Update pyprismatic-2.0.ebuild
commit 0b7fcf9639be3e82b30db7da1cc4785887b54326
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat Nov 25 04:52:49 2023 +0300
mass updated PYTHON_COMPAT for python:3
commit 0e523faf7b184df56a5394f0cbc663cb2b998f44
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Nov 21 18:49:09 2023 +0000
prismatic added (#228)
* Add files via upload
* sk1
* Add files via upload
* alpine
* Add files via upload
* Add files via upload
* Deadbeef
* yd-tools
* gcc-switcher
* portopts
* aptana
* lxpanelx
* py2_eclass
* fontforge py2
* ortp
* sofastat
* Add files via upload
* skb
* Add files via upload
* wmfs
* Update link-traits-1.0.3.ebuild
* Add files via upload
* zarr
* Add files via upload
* Add files via upload
* Add files via upload
* dev-python/monty added
potential issues with pytorch
* Add files via upload
* traitsui
* Add files via upload
* Add files via upload
* Add files via upload
* fabio
* Add files via upload
* pyprismatic added
* prismatic added
* atomap added
* opencv[cuda]
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 23:16:52 2026 +0200
*/*: normalize metadata.xml DTD URL and indent
Repo-wide sweep: 144 metadata.xml files updated to use the
https://www.gentoo.org/dtd/metadata.dtd DTD URL (was http://) and
2-space indentation (was tabs). Maintainer blocks left untouched —
the 2026-04-22 normalization sweep added <name> alongside <email>
where the maintainer was Ivan, but third-party maintainer entries
(lebedev.vasya@gmail.com, megagreener@gmail.com, brothermechanic@gmail.com,
etc.) keep their email-only blocks since we can't safely guess the
corresponding <name>.
pkgcheck stays silent on all metadata-* and maintainer-* checks.
commit 5db7d981962ce867a53e7c9f893077f652030376
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 16:24:34 2026 +0200
dev-python/pyprismatic: bump nvcc -arch to sm_75 on CUDA 13
Mirrors the sci-physics/prismatic CUDA 13 fix: the bundled CMakeLists.txt hard-codes
`-arch=sm_60`, which CUDA 13 rejects because compute capability < 7.5 was dropped.
Adds a src_prepare that, when CUDA_VERSION reported by the live cuda.h is >= 13000,
sed-replaces the line to `-arch=sm_75`. CUDA 12 systems keep the original sm_60.
Tested live with nvidia-cuda-toolkit-13.2.1: pyprismatic-2.0 USE=gpu builds and
`import pyprismatic` succeeds.
commit 0b54b7d9b325c875843cd3541cb936fb4248f47c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 13:53:29 2026 +0200
dev-python/pyprismatic: declare upstream numpy lower bound
Upstream setup.py for 2.0 declares install_requires=['numpy>=1.13.0'];
the ebuild was leaving the version unbounded. Tighten the lower bound.
h5py and scipy are intentionally kept in RDEPEND despite being absent
from upstream metadata: pyprismatic/process.py and __init__.py import
them directly.
commit 44e29ed04b834235689a4cb9760a712a31ec5b05
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Apr 24 20:13:03 2026 +0200
dev-python/pyprismatic: fix 2.0 build and declare missing Python deps
The ebuild didn't build against current ::gentoo and wouldn't import
even if it did. Fixes:
* cxx17-standard.patch: CMAKE_CXX_STANDARD 11 -> 17 (Boost 1.90 math
headers require it) plus NVCC_FLAGS_EXTRA -std=c++11 -> c++17 for
the gpu path.
* boost-bessel-qualify.patch: disambiguate cyl_bessel_k between
boost::math:: and C++17's std::cyl_bessel_k in projectedPotential.
* complex-literal.patch: std::complex<float> = 0.0 + 1.0i no longer
narrows silently under GCC 15; use the two-arg constructor.
Three patches are copies of the ones landed in sci-physics/prismatic
(same upstream source tree); packages own their own FILESDIR.
Ebuild cleanups:
* Drop unused debug / python / doc IUSE; the flags had no wiring.
* Move dev-build/cmake from RDEPEND to BDEPEND, move CUDA there too
under gpu? (build-time only).
* Drop the cargo-cult BUILD_DIR=$ override.
Runtime deps fix:
* Add dev-python/{numpy,h5py,scipy} via python_gen_cond_dep. These
were missing entirely -- import pyprismatic pulls them in via
process.py / fileio.py, so the previous ebuild would ImportError
at first use regardless of build success.
Tested on python3.13: core.so builds, loads, and exposes the go()
entry point. Full import pyprismatic blocked on this host by an
unrelated system-wide h5py/HDF5 ABI mismatch.
commit b91cd93a12cb39be1b4976cdc1af27ca13ce34e5
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 15:16:42 2026 +0200
*/*: bump PYTHON_COMPAT from python3_ to python3_
::gentoo has dropped python3.11 from most of the scientific Python
stack - scipy, pandas, ipython, sphinx, sympy, etc. all target
python3_ now. Overlay ebuilds still claiming python3_11
support therefore fail to resolve their PYTHON_USEDEP=[...,
python_targets_python3_11(-),...] clauses against those upstream
packages, which is the bulk of pkgcheck's NonsolvableDeps noise.
Sweep PYTHON_COMPAT across the overlay accordingly. Files touched
include 193 pure-python3 ebuilds plus 4 sci-libs/pycifrw ebuilds that
retain the python2_7 target. Commented-out COMPAT lines and one
ebuild using a custom $ array are left alone.
pkgcheck dropped from 710 to 475 lines after this change; specifically
NonsolvableDepsIn{Dev,Stable} fell from 391 to 182 combined.
Users on a python3.11 profile lose access to the updated versions in
this overlay, mirroring what ::gentoo already did to the rest of the
scientific stack.
Signed-off-by: Raukaan Cogbrother <cogbrother@raukaan.local>
commit 333a849082e704941d018a7f0b99678eda18904f
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 01:07:29 2026 +0200
*/*: bump PYTHON_COMPAT to python3_
Match the ::gentoo convention (main tree dropped 3.9 / 3.10 support
a while ago). Three mechanical substitutions:
- python3_ -> python3_ (189 ebuilds)
- python3_ -> python3_ (llvmlite)
- python2_7 python3_ -> python2_7 python3_ (pycifrw)
Leaves the legacy python2_7-only ebuilds and dev-python/cython
(special PYTHON_TESTED pattern on the 0.29 series) untouched.
commit a33d44fa70785ccc57ef09ca67745073c1881156
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sun Apr 19 14:51:22 2026 +0200
dev-python/pyprismatic: rename distfile to share with sci-physics/prismatic
commit f23ece73c4451e2377c17d8b90acb53bee608563
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 15 21:28:34 2026 +0100
*/*: UPD header, Happy New Year
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 7313b9aeadb331a92c46a2fbf9a31359ad288979
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 14:28:32 2025 +0100
dev-python/pyprismatic: styling
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit bd56ad8c4cfa96514317be4d851cb4fcbd6b8802
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 10:40:56 2025 +0100
*/*: adjusting python compat to 3.9 to 3.14
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 02fee3b133501e13cd97dc4acb029379621c8d56
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 01:05:20 2025 +0100
multiple styling corrections to make pkgscan happy
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 75d55441dbb2e55a7102e44b643e2e17cdfbc05d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Oct 17 21:58:20 2025 +0200
finally upd year to 2025 :)
commit 4e98d8e859ba751c01de3f76f3d3bf9fe9f7f5d2
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Sep 21 19:27:20 2025 +0100
prismatic
commit b451ac3b81ed540a5ce0bbef96d542cd2a2a0dcd
Author: istitov <istitov@github>
Date: Mon Feb 12 10:45:30 2024 +0100
upd copyright to 2024
commit 5b6b04a1d18b8ca4777209caaca0f9f8bb849432
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Feb 11 11:24:32 2024 +0000
Update pyprismatic-2.0.ebuild
commit 0b7fcf9639be3e82b30db7da1cc4785887b54326
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat Nov 25 04:52:49 2023 +0300
mass updated PYTHON_COMPAT for python:3
commit 0e523faf7b184df56a5394f0cbc663cb2b998f44
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Nov 21 18:49:09 2023 +0000
prismatic added (#228)
* Add files via upload
* sk1
* Add files via upload
* alpine
* Add files via upload
* Add files via upload
* Deadbeef
* yd-tools
* gcc-switcher
* portopts
* aptana
* lxpanelx
* py2_eclass
* fontforge py2
* ortp
* sofastat
* Add files via upload
* skb
* Add files via upload
* wmfs
* Update link-traits-1.0.3.ebuild
* Add files via upload
* zarr
* Add files via upload
* Add files via upload
* Add files via upload
* dev-python/monty added
potential issues with pytorch
* Add files via upload
* traitsui
* Add files via upload
* Add files via upload
* Add files via upload
* fabio
* Add files via upload
* pyprismatic added
* prismatic added
* atomap added
* opencv[cuda]


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