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Use BED and GFF files from python using BEDtools

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  • pybedtools-0.12.1
    ~amd64
    test python_targets_python3_12 python_targets_python3_13 python_targets_python3_14 debug

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    Overlay: science

ChangeLog

commit 0277b40f0bd3a7138e42c8a46528643ffc1b01ed
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Sun Oct 25 10:19:55 2026 +0000

dev-python/pybedtools: add 0.12.1, drop 0.12.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Part-of: https://github.com/gentoo/sci/pull/1410
Closes: https://github.com/gentoo/sci/pull/1410
Signed-off-by: Alexander Puck Neuwirth <apn-pucky@gentoo.org>

commit 891a51b62dabdab6dacb293a44b97dab7b4e2a9b
Author: Alexander Puck Neuwirth <apn-pucky@gentoo.org>
Date: Mon Nov 2 01:00:30 2026 +0100

dev-python/pybedtools: unkeyword 0.12.0 for ~x86

Signed-off-by: Alexander Puck Neuwirth <apn-pucky@gentoo.org>
Part-of: https://github.com/gentoo/sci/pull/1424

commit cd1b922daab0c3cbed78da47e004835a262b9ef9
Author: Nowa Ammerlaan <nowa@gentoo.org>
Date: Wed Mar 18 14:53:50 2026 +0100

*: mass drop py3_10

Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>

commit 438a2aa89bbd25b82527eaa13e74918f0b68c8c1
Author: Nowa Ammerlaan <nowa@gentoo.org>
Date: Fri Mar 21 16:04:05 2025 +0100

dev-python/pybedtools: enable py3.13

Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>

commit d0e7d951c2473ecab85ed1421e5a8de0fa947f8a
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Tue Mar 18 21:58:42 2025 +0000

dev-python/pybedtools: version bump 0.12.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Closes: https://github.com/gentoo/sci/pull/1337
Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>

commit 1e2e5e5c5128af6c57924c4785746b90b77882f4
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Sun Jan 26 12:40:24 2025 +0000

dev-python/pybedtools: version bump 0.11.0 and disable lto

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Closes: https://github.com/gentoo/sci/pull/1316
Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>

commit 45eacba59a5cb5bfd342b49cd30677887efac7f0
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Fri Jul 19 08:51:36 2024 +0000

dev-python/bedtools: move from sci-biology, version bump 0.10.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Closes: https://github.com/gentoo/sci/pull/1285
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>