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dev-python/proteinflow

Versatile pipeline for processing protein structure data for deep learning applications.

Screenshots

  • proteinflow-2.8.0
    ~amd64 ~x86
    processing python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: BSD   
    Overlay: pypi

Runtime Dependencies

proteinflow-2.8.0





<dev-python/numpy-1.25[python_targets_python3_11
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dev-python/editdistance[python_targets_python3_11
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dev-python/biopython[python_targets_python3_11
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>=dev-python/click-8.1.3[python_targets_python3_11
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dev-python/biopandas[python_targets_python3_11
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dev-python/boto3[python_targets_python3_11
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dev-python/p-tqdm[python_targets_python3_11
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~dev-python/networkx-2.8.8[python_targets_python3_11
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,python_targets_python3_13
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dev-python/einops[python_targets_python3_11
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,python_targets_python3_14
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>=dev-python/pandas-1.5.2[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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dev-python/torch[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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dev-python/biotite[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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]




dev-python/aiobotocore[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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]




dev-python/awscli[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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]




dev-python/bs4[python_targets_python3_11
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,python_targets_python3_13
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>=dev-python/pyyaml-6.0[python_targets_python3_11
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,python_targets_python3_13
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]




dev-python/rcsbsearch[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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]




dev-python/pre-commit[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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dev-python/rdkit[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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dev-python/pypdb[python_targets_python3_11
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dev-python/joblib[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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processing?
      ( dev-python/py3Dmol[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/methodtools[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/tmtools[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/fair-esm[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/MDAnalysis[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/ablang[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/igfold[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/ImmuneBuilder[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

processing?
      ( dev-python/blosum[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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,python_targets_python3_14
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] )

python_targets_python3_11?
      ( dev-lang/python:3.11 )

python_targets_python3_12?
      ( dev-lang/python:3.12 )

python_targets_python3_13?
      ( dev-lang/python:3.13 )

python_targets_python3_14?
      ( dev-lang/python:3.14 )