gpo.zugaina.org

Search Portage & Overlays:

dev-python/emdfile

hdf5-based Electron Microscopy Dataset

Screenshots

  • emdfile-0.0.16
    ~amd64
    python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: MIT   
    Overlay: stuff
  • emdfile-0.0.15
    ~amd64
    python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: GPL-3   
    Overlay: stuff

ChangeLog

commit 946b3d5e6f85aa6d17632eb69d8c14152e056548
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 23:16:52 2026 +0200

*/*: normalize metadata.xml DTD URL and indent

Repo-wide sweep: 144 metadata.xml files updated to use the
https://www.gentoo.org/dtd/metadata.dtd DTD URL (was http://) and
2-space indentation (was tabs). Maintainer blocks left untouched —
the 2026-04-22 normalization sweep added <name> alongside <email>
where the maintainer was Ivan, but third-party maintainer entries
(lebedev.vasya@gmail.com, megagreener@gmail.com, brothermechanic@gmail.com,
etc.) keep their email-only blocks since we can't safely guess the
corresponding <name>.

pkgcheck stays silent on all metadata-* and maintainer-* checks.

commit 3f9a33eef38631ec993f2a6756e9cfb37cca1876
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 12:38:19 2026 +0200

dev-python/emdfile: declare upstream version bounds; correct 0.0.16 license

Upstream pyproject.toml lists h5py>=3.2.0 and tqdm>=4.46.1 in
[project].dependencies for both 0.0.15 and 0.0.16; the ebuilds had
been leaving the version unconstrained. Add the lower bounds.

emdfile 0.0.16 also relicensed from GPLv3 to MIT (the LICENSE file in
the unpacked sdist contains a fresh MIT notice while 0.0.15 still
ships GPLv3). Update LICENSE accordingly. The 0.0.15 ebuild remains
GPL-3.

commit 9353f5f2c4a78ccee1ef5dbfaecde6c9e70de6ab
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 28 23:53:12 2026 +0200

dev-python/emdfile: drop bogus python USE flag

Drop IUSE='doc python', the matching REQUIRED_USE='python? (
$ )', and doc? ( dev-util/gtk-doc ) from DEPEND
across both 0.0.15 and 0.0.16. distutils-r1 has no 'python' USE flag,
the manual REQUIRED_USE overwrote the eclass-set one and gated it on
a default-off flag, and gtk-doc is for GLib/GTK C libraries (not pure
Python).

commit 3d86b3a1db45144bffd411fff713dd741d26b054
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 22 14:48:50 2026 +0200

dev-python/emdfile: add 0.0.16

commit e06bbef0b0c0b5a5b54b6a014397e17cea8f0b7d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 22 14:48:36 2026 +0200

dev-python/emdfile: drop 0.0.14

commit b91cd93a12cb39be1b4976cdc1af27ca13ce34e5
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 15:16:42 2026 +0200

*/*: bump PYTHON_COMPAT from python3_ to python3_

::gentoo has dropped python3.11 from most of the scientific Python
stack - scipy, pandas, ipython, sphinx, sympy, etc. all target
python3_ now. Overlay ebuilds still claiming python3_11
support therefore fail to resolve their PYTHON_USEDEP=[...,
python_targets_python3_11(-),...] clauses against those upstream
packages, which is the bulk of pkgcheck's NonsolvableDeps noise.

Sweep PYTHON_COMPAT across the overlay accordingly. Files touched
include 193 pure-python3 ebuilds plus 4 sci-libs/pycifrw ebuilds that
retain the python2_7 target. Commented-out COMPAT lines and one
ebuild using a custom $ array are left alone.

pkgcheck dropped from 710 to 475 lines after this change; specifically
NonsolvableDepsIn{Dev,Stable} fell from 391 to 182 combined.

Users on a python3.11 profile lose access to the updated versions in
this overlay, mirroring what ::gentoo already did to the rest of the
scientific stack.

Signed-off-by: Raukaan Cogbrother <cogbrother@raukaan.local>

commit 333a849082e704941d018a7f0b99678eda18904f
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 01:07:29 2026 +0200

*/*: bump PYTHON_COMPAT to python3_

Match the ::gentoo convention (main tree dropped 3.9 / 3.10 support
a while ago). Three mechanical substitutions:

- python3_ -> python3_ (189 ebuilds)
- python3_ -> python3_ (llvmlite)
- python2_7 python3_ -> python2_7 python3_ (pycifrw)

Leaves the legacy python2_7-only ebuilds and dev-python/cython
(special PYTHON_TESTED pattern on the 0.29 series) untouched.

commit 87f2844ef04e0ec2e43d266b6f47d4287eb8d98c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sun Apr 19 15:03:10 2026 +0200

dev-python/emdfile: fix incorrect upstream remote-id

commit cf32eaaf69c92117a728c0ba5bf3b2d43453080b
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sun Apr 19 14:10:40 2026 +0200

dev-python/emdfile: use canonical LICENSE name

commit f23ece73c4451e2377c17d8b90acb53bee608563
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 15 21:28:34 2026 +0100

*/*: UPD header, Happy New Year

Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>

commit faa1a6bd0ab2591e7f00f30c0e9a6e14a81f56b3
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 12:32:55 2025 +0100

Corrected missing blank line after EAPI warning

Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>

commit bd56ad8c4cfa96514317be4d851cb4fcbd6b8802
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 10:40:56 2025 +0100

*/*: adjusting python compat to 3.9 to 3.14

Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>

commit 2355e51f8c2d0b8713f40cfe8d856f41c9b76e28
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Dec 10 21:49:56 2025 +0100

dev-python/emdfile: add github, pypi upstream metadata

Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>

commit 75d55441dbb2e55a7102e44b643e2e17cdfbc05d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Oct 17 21:58:20 2025 +0200

finally upd year to 2025 :)

commit f7f582609c1bcf0165a404255be3569abbdf1bfb
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Tue Jun 18 00:17:10 2024 +0100

emdfile version bump

commit b451ac3b81ed540a5ce0bbef96d542cd2a2a0dcd
Author: istitov <istitov@github>
Date: Mon Feb 12 10:45:30 2024 +0100

upd copyright to 2024

commit 19e63f47f8e1fd603c32605936c30291033670a7
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Sun Nov 26 17:15:18 2023 +0000

dev-python/emdfile added