dev-java/scigraph-bin
Web services for SciGraph, A Neo4j backed ontology store.
-
scigraph-bin-9999~amd64 ~x86+core
View Download Browse License: Apache-2.0Overlay: tgbugs-overlay
ChangeLog
commit 6e76baf276058a2061e6092cb2df2a1a7f69a4b2
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Dec 19 16:39:06 2024 -0500
dev-java/scigraph-bin: remove xvfb dep
needs the no-images branch to work
commit 257f40ee24170b5b79e62d9e627b409dffd3b9a0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Feb 21 13:30:40 2023 -0800
dev-java/scigraph-bin: relax jvm version depends
note, need to use jvm-17 branch for 17 support for now
commit 0faf573cf793c8f9e121162d68eea965572ac912
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Feb 16 21:26:02 2023 -0800
dev-java/scigraph-bin: first pass jvm 17 support
commit 937d8461552ce1d15a587ca144f6d34751172e86
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Feb 25 10:20:05 2022 -0800
dev-java/scigraph-bin: depend on jvm:1.8 slot until 11 compat resolved
commit f23fe242b744b5dac51c846741d0c7d82d6ef789
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Jan 14 00:06:40 2022 -0500
scigraph blazegraph robot eapi -> 8 now that java-pkg-2 supports it
commit c0e6ba5fe123ffaed2e164f5f7fb41abd1fb56a3
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Dec 12 14:08:13 2021 -0800
dev-java/scigraph-bin: simplify build
building inside SciGraph-services is not required since it is done
automatically as part of the top level build
commit 01d23cf0575fe356ce6a0350896b7671bf576766
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Sep 23 02:09:53 2021 -0700
dev-java/scigraph-bin: fix stdout redirect in rc
was a hold over from an alternate way of running scigraph which is no
longer needed, was causing permissions errors the first time scigraph
was starteded after being installed on a system, now fixed
commit 16b7ad0943270faddfea1455f581d8dfd9ec1042
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Wed Sep 15 21:49:07 2021 -0700
dev-db/blazegraph-bin dev-java/scigraph-bin fix IDEPEND
for eapi 7 IDEPEND has to be part of RDEPEND and DEPEND for these
because the users are needed on both build and install systems
commit 466613e8fc44d2a6c026ad7a3b5bd2af3fc81766
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Sep 14 21:31:50 2021 -0700
Revert "dev-java/{scigraph,robot}-bin: add nss dependency"
This reverts commit 59a04a6d1f27595968b44132fd7491eb3015d89a.
This issue is not with these ebuilds.
The issue is with icedtea on musl.
commit 59a04a6d1f27595968b44132fd7491eb3015d89a
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Sep 14 20:13:59 2021 -0700
dev-java/{scigraph,robot}-bin: add nss dependency
commit afc3da13f07651f2e3342ff69f9b31209a05a234
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 22 22:48:43 2021 -0700
dev-java/scigraph-bin: set DISPLAY for systemd service
commit 29b8bf1b03bd9dc008fa0745fb433e801e1346f0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 15 18:59:59 2021 -0700
dev-java/scigraph-bin: add acct-{user,group}
suggest to set the following in /etc/portage/make.conf
ACCT_GROUP_SCIGRAPH_ID=835
ACCT_USER_SCIGRAPH_ID="$"
commit c90f6087e5e04e49cd6e40ea7bcb45141f51969f
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 8 16:19:05 2021 -0700
dev-java/scigraph-bin: rc create log location
note also that in order to get maven to work with the new portage home
location you have to mkdir /var/tmp/portage/.m2/repository and add
<localRepository>/var/tmp/portage/.m2/repository</localRepository>
to /var/lib/portage/home/.m2/settings.xml to avoid the sandbox
violations, it might be possible to create a very hacky maven eclass
that put the repository in /var/cache/distfiles/maven/repository or
something like that, though it does open a portal to the realm of
insanity and invite in the creeping madness
commit edfccc53c7bfcbca8b717c262a05151eba848e27
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Feb 23 16:28:10 2020 -0800
dev-java/scigraph-bin: fix SVC user group
should always be scigraph since that is hard coded
commit 824d6601bc8beae886c7424f2a3207ef8b993822
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Feb 23 15:55:22 2020 -0800
dev-java/scigraph-bin rename services file for consistency
NOTICE: if you have an existing install and you update you will
probably want/need to copy /etc/conf.d/scigraph-services to
/etc/conf.d/scigraph and/or update them in a more judicious manner.
NOTE: if you run this install while old services are running you should
be able to stop them by symlinking /etc/init.d/scigraph to
scigraph-services
this way the service name is the same across systemd and openrc
also fix the rc files so that the log location is dereference in the
rc file rather than in the confd file in the event something weird
goes on and SERVICES_LOG_LOC is removed from the confd file
commit b77e8e7f8967a002e517f6f43c38689a4931e258
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Dec 6 17:22:11 2019 -0800
rewrite copyright headers part 2
update all Manifests
for a fun time
_remainfest_inner () {
local _pat="*.ebuild"
pushd "$@" > /dev/null;
local _files=( $_pat )
ebuild $_files digest;
popd > /dev/null;
}
export -f _remainfest_inner
remanp () {
git ls-files '*.ebuild' | cut -d' ' -f3 | cut -d'/' -f1,2 | sort -u | xargs -P15 -r -n 1 -- bash -c '_remainfest_inner "$@"' _
}
remanp
commit fd49fca7fbc1450a730cac76d162feb848d02c58
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Dec 6 15:25:46 2019 -0800
rewrite copyright headers part 1
conversion done with
=sed -i 's/201[0-9]\ Gentoo\ Foundation/2019\ Gentoo\ Authors/g' */*/*.ebuild=
there are a number of fiddly changes that need to be made before all the
Manifests can be regenerated (which will be part 2)
commit 01c966089c20b34fc79bb70a01636768f6c795d0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Wed Jun 5 12:57:36 2019 -0700
dev-java/scigraph-bin xvfb fixes
commit 8335a12d8e337f6b8f45cdfb49a9d89d5bf2c992
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue May 21 14:08:05 2019 -0700
dev-java/scigraph scigraph-services.rc fix SVCUSER vs USER issue
commit 9daeccd573676f424cc7548edc00c939c10b8f44
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 22 22:44:16 2019 -0700
dev-python/scigraph-bin rc updated to make run dir if it doesn't exist
commit d54e449f62b349e404a70267b053a75eaf2b0c22
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 19:05:52 2019 -0700
dev-java/scigraph-bin network-sandbox workaround
rrrrrrr, I really want someone to work on gentoo maven support, it is
maddening >_<
commit e5e0a3614234f602651fd033815c36de6beb2aec
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 12:56:05 2019 -0700
dev-java/scigraph-bin die correctly during compile
commit 6dec124c6a0ab7421464cff00e0cf49cf368e301
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 12:49:29 2019 -0700
dev-java/scigraph-bin/Manifest updated
commit 23bb848875927ac19e47c654c44a01f228b3ff33
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 21:48:36 2019 -0700
scigraph systemd bugfixes
commit 28956e53993dcd459b39342aabafc04c3fef1825
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 17:39:48 2019 -0700
dev-java/scigraph-bin/files/scigraph.service added for systemd
commit ad34f5e14c92f2b971c8339f180cca6a53d56ce8
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 12:28:41 2019 -0700
dev-java/scigraph-services-bin -> dev-java/scigraph-bin
renamed package to reflect that this ebuild can install either services
or core
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Dec 19 16:39:06 2024 -0500
dev-java/scigraph-bin: remove xvfb dep
needs the no-images branch to work
commit 257f40ee24170b5b79e62d9e627b409dffd3b9a0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Feb 21 13:30:40 2023 -0800
dev-java/scigraph-bin: relax jvm version depends
note, need to use jvm-17 branch for 17 support for now
commit 0faf573cf793c8f9e121162d68eea965572ac912
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Feb 16 21:26:02 2023 -0800
dev-java/scigraph-bin: first pass jvm 17 support
commit 937d8461552ce1d15a587ca144f6d34751172e86
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Feb 25 10:20:05 2022 -0800
dev-java/scigraph-bin: depend on jvm:1.8 slot until 11 compat resolved
commit f23fe242b744b5dac51c846741d0c7d82d6ef789
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Jan 14 00:06:40 2022 -0500
scigraph blazegraph robot eapi -> 8 now that java-pkg-2 supports it
commit c0e6ba5fe123ffaed2e164f5f7fb41abd1fb56a3
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Dec 12 14:08:13 2021 -0800
dev-java/scigraph-bin: simplify build
building inside SciGraph-services is not required since it is done
automatically as part of the top level build
commit 01d23cf0575fe356ce6a0350896b7671bf576766
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Sep 23 02:09:53 2021 -0700
dev-java/scigraph-bin: fix stdout redirect in rc
was a hold over from an alternate way of running scigraph which is no
longer needed, was causing permissions errors the first time scigraph
was starteded after being installed on a system, now fixed
commit 16b7ad0943270faddfea1455f581d8dfd9ec1042
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Wed Sep 15 21:49:07 2021 -0700
dev-db/blazegraph-bin dev-java/scigraph-bin fix IDEPEND
for eapi 7 IDEPEND has to be part of RDEPEND and DEPEND for these
because the users are needed on both build and install systems
commit 466613e8fc44d2a6c026ad7a3b5bd2af3fc81766
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Sep 14 21:31:50 2021 -0700
Revert "dev-java/{scigraph,robot}-bin: add nss dependency"
This reverts commit 59a04a6d1f27595968b44132fd7491eb3015d89a.
This issue is not with these ebuilds.
The issue is with icedtea on musl.
commit 59a04a6d1f27595968b44132fd7491eb3015d89a
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue Sep 14 20:13:59 2021 -0700
dev-java/{scigraph,robot}-bin: add nss dependency
commit afc3da13f07651f2e3342ff69f9b31209a05a234
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 22 22:48:43 2021 -0700
dev-java/scigraph-bin: set DISPLAY for systemd service
commit 29b8bf1b03bd9dc008fa0745fb433e801e1346f0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 15 18:59:59 2021 -0700
dev-java/scigraph-bin: add acct-{user,group}
suggest to set the following in /etc/portage/make.conf
ACCT_GROUP_SCIGRAPH_ID=835
ACCT_USER_SCIGRAPH_ID="$"
commit c90f6087e5e04e49cd6e40ea7bcb45141f51969f
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Jul 8 16:19:05 2021 -0700
dev-java/scigraph-bin: rc create log location
note also that in order to get maven to work with the new portage home
location you have to mkdir /var/tmp/portage/.m2/repository and add
<localRepository>/var/tmp/portage/.m2/repository</localRepository>
to /var/lib/portage/home/.m2/settings.xml to avoid the sandbox
violations, it might be possible to create a very hacky maven eclass
that put the repository in /var/cache/distfiles/maven/repository or
something like that, though it does open a portal to the realm of
insanity and invite in the creeping madness
commit edfccc53c7bfcbca8b717c262a05151eba848e27
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Feb 23 16:28:10 2020 -0800
dev-java/scigraph-bin: fix SVC user group
should always be scigraph since that is hard coded
commit 824d6601bc8beae886c7424f2a3207ef8b993822
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Sun Feb 23 15:55:22 2020 -0800
dev-java/scigraph-bin rename services file for consistency
NOTICE: if you have an existing install and you update you will
probably want/need to copy /etc/conf.d/scigraph-services to
/etc/conf.d/scigraph and/or update them in a more judicious manner.
NOTE: if you run this install while old services are running you should
be able to stop them by symlinking /etc/init.d/scigraph to
scigraph-services
this way the service name is the same across systemd and openrc
also fix the rc files so that the log location is dereference in the
rc file rather than in the confd file in the event something weird
goes on and SERVICES_LOG_LOC is removed from the confd file
commit b77e8e7f8967a002e517f6f43c38689a4931e258
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Dec 6 17:22:11 2019 -0800
rewrite copyright headers part 2
update all Manifests
for a fun time
_remainfest_inner () {
local _pat="*.ebuild"
pushd "$@" > /dev/null;
local _files=( $_pat )
ebuild $_files digest;
popd > /dev/null;
}
export -f _remainfest_inner
remanp () {
git ls-files '*.ebuild' | cut -d' ' -f3 | cut -d'/' -f1,2 | sort -u | xargs -P15 -r -n 1 -- bash -c '_remainfest_inner "$@"' _
}
remanp
commit fd49fca7fbc1450a730cac76d162feb848d02c58
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Dec 6 15:25:46 2019 -0800
rewrite copyright headers part 1
conversion done with
=sed -i 's/201[0-9]\ Gentoo\ Foundation/2019\ Gentoo\ Authors/g' */*/*.ebuild=
there are a number of fiddly changes that need to be made before all the
Manifests can be regenerated (which will be part 2)
commit 01c966089c20b34fc79bb70a01636768f6c795d0
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Wed Jun 5 12:57:36 2019 -0700
dev-java/scigraph-bin xvfb fixes
commit 8335a12d8e337f6b8f45cdfb49a9d89d5bf2c992
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Tue May 21 14:08:05 2019 -0700
dev-java/scigraph scigraph-services.rc fix SVCUSER vs USER issue
commit 9daeccd573676f424cc7548edc00c939c10b8f44
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 22 22:44:16 2019 -0700
dev-python/scigraph-bin rc updated to make run dir if it doesn't exist
commit d54e449f62b349e404a70267b053a75eaf2b0c22
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 19:05:52 2019 -0700
dev-java/scigraph-bin network-sandbox workaround
rrrrrrr, I really want someone to work on gentoo maven support, it is
maddening >_<
commit e5e0a3614234f602651fd033815c36de6beb2aec
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 12:56:05 2019 -0700
dev-java/scigraph-bin die correctly during compile
commit 6dec124c6a0ab7421464cff00e0cf49cf368e301
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Fri Mar 15 12:49:29 2019 -0700
dev-java/scigraph-bin/Manifest updated
commit 23bb848875927ac19e47c654c44a01f228b3ff33
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 21:48:36 2019 -0700
scigraph systemd bugfixes
commit 28956e53993dcd459b39342aabafc04c3fef1825
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 17:39:48 2019 -0700
dev-java/scigraph-bin/files/scigraph.service added for systemd
commit ad34f5e14c92f2b971c8339f180cca6a53d56ce8
Author: Tom Gillespie <tgbugs@gmail.com>
Date: Thu Mar 14 12:28:41 2019 -0700
dev-java/scigraph-services-bin -> dev-java/scigraph-bin
renamed package to reflect that this ebuild can install either services
or core