Browse sci-chemistry
aqua
autodock
A suite of automated docking toolsautodock_vina
AutoDock Vina is a new program for drug discovery and molecular dockingavogadro2
bodr
The Blue Obelisk Data Repository listing element and isotope properties.browndye
cara-bin
An application for the analysis of NMR spectra and Computer Aided Resonance Assignmentchemex
chemical-mime-data
A collection of data files to add support for chemical MIME types.chemtool
A GTK program for drawing organic moleculeschimera
clashlist
cluster
concoord
ctffind
dl_poly
drawxtl
dssp
The protein secondary structure standardeasychem
Chemical structure drawing program - focused on presentation.elem
periodic table of the elementserkale
gamess
gelemental
a periodic table viewer that provides detailed information on the chemical elements.gnome-chemistry-utils
gperiodic
Periodic table application for Linuxgromacs
The ultimate molecular dynamics simulation packageGromacsWrapper
jligand
ksdssp
ksdssp is an open source implementation of dsspmdanalysis
mics
modeller
molden
Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac.moldy
Program for performing molecular dynamics simulations.molequeue
molmol
Publication-quality molecular visualization packagemolsketch
mopac7
Autotooled, updated version of a powerful, fast semi-empirical packageMotionCor2
mpqc
The Massively Parallel Quantum Chemistry Programmsms-bin
mustang
MUltiple STructural AligNment AlGorithm.namd
A powerful and highly parallelized molecular dynamics codenmrpipe
openbabel
interconverts file formats used in molecular modelingovito
pales-bin
panav
ParmEd
pdbcat
pdbcns
pdbmat
probe
Evaluates atomic packing within or between moleculesprocheck
Checks the stereochemical quality of a protein structurepropka
psi
pymol
A Python-extensible molecular graphics system.raster3d
a set of tools for generating high quality raster images of proteins or other moleculesrelion
sage-jmol-bin
ssp
suitename
surf
theseus
Maximum likelihood superpositioning and analysis of macromolecular structuresthreeV
tinker
TINKER is a molecular modeling package that includes force fields for handing large molecules and large systems, such as AMBER and CHARMM. A Java based visualization front end is included.tm-align
vesta
vesta-bin
vmd
Visual Molecular Dynamicsvotca
wxmacmolplt
Chemical 3D graphics program with GAMESS input builderxcrysden
xds-bin
X-ray Detector Software for processing single-crystal monochromatic diffraction data.xyza2pipe