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dev-perl/Log-Cabin

Partial implementation of Log::Log4perl with reduced disk IO

dev-perl/Scalar-Util-Numeric

Wrappers around perl's builtin looks_like_number function

dev-perl/Text-Graph

Perl module for generating simple text-based graphs

dev-perl/Set-IntSpan-Fast

Fast handling of sets containing integer spans

dev-perl/Text-ParseWords

Parse strings containing shell-style quoting

dev-perl/Text-RecordParser

Perl module to read record-oriented files

dev-perl/Time-Progress

Elapsed and estimated finish time reporting

dev-perl/go-db-perl

Gene Ontology Database perl API

dev-perl/Bio-BigFile

BigWig and BigBed file perl-based interface for Gbrowse-2

dev-python/fslpy

The FSL Python Library

dev-python/grabbit

Get grabby with file trees

dev-python/hdf5storage

Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files

dev-python/num2words

Modules to convert numbers to words.

dev-python/pyBigWig

quick access to and creation of bigWig files

dev-python/py2bit

Python library for accessing 2bit files

dev-python/pynrrd

Simple pure-python module for reading and writing nrrd files

dev-python/python-gantt

Draw Gantt charts from Python

dev-python/pysolar

Collection of Python libraries for simulating the irradiation by the sun

dev-python/trimesh

Python library for loading and using triangular meshes

dev-python/xopen

Open compressed files transparently

dev-util/ndiff

A diff program that ignores small numeric differences

dev-util/makefile2graph

Create a graph of dependencies from GNU Make

dev-util/f90cache

Compiler cache for fortran

dev-util/plog

Portable, simple and extensible C++ logging library

dev-util/mad-numdiff

compare unformatted text files with numerical content

media-gfx/brlcad

Constructive solid geometry modeling system

media-libs/libgfx

Simplify the creation of computer graphics software

media-libs/imgui

Bloat-free graphical user interface library for C++

media-libs/glbinding

Cross-platform C++ binding for the OpenGL API

net-misc/cernbox-client

Synchronize files from CERNBox EOS with your computer

sci-biology/ANGLE-bin

CDS prediction overcoming sequencing errors in unfinished cDNA

sci-biology/FLASH

Paired-end mates merge from fragments

sci-biology/IMAGE

Iterative Mapping and Assembly for Gap Elimination using paired-end Illumina

sci-biology/MochiView

Genome browser and analysis

sci-biology/SSAKE

Short-read trimmer, OLC assembler, scaffolder in PERL using the 3'-most k-mers

sci-biology/SolexaQA

Analyze and trim single-end and paired-end reads, show quality statistics

sci-biology/YASRA

Yet Another Short Read Assembler aligning to a reference using LASTZ

sci-biology/aghermann

A sleep-research experiment manager, EDF viewer & Process S simulator

sci-biology/bru2nii

Converts Bruker ParaVision MRI data to the NIfTI file format

sci-biology/cast-bin

Predict low-complexity regions in putative proteins

sci-biology/cdbfasta

FASTA record indexing/retrievieng utility

sci-biology/cnrun

A NeuroML-enabled, precise but slow neuronal network simulator

sci-biology/conform-gt

Modify your Variant Call Format file to be consistent with reference VCF

sci-biology/cross_genome

Genome scaffolding using cross-species synteny

sci-biology/ffindex

Simple index/database for huge amounts of small files

sci-biology/idba

De novo De Bruijn graph assembler iteratively using multimple k-mers

sci-biology/lucy

DNA sequence quality and vector trimming tool

sci-biology/parafly

Parallel cmd processing utility

sci-biology/perlprimer

Primers design for standard PCR, bisulphite PCR and Real-time PCR

sci-biology/pileup

SSAHA2-based pipeline to align reads