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sci-chemistry/psi
Suite for ab initio quantum chemistry computing various molecular properties
sci-chemistry/raster3d
Generation high quality raster images of proteins or other molecules
sci-chemistry/suitename
The ROC RNA Ontology nomenclature and conformer-list development
sci-chemistry/surf
Solvent accesible Surface calculator
sci-chemistry/theseus
Maximum likelihood superpositioning and analysis of macromolecular structures
sci-chemistry/threeV
3V: Voss Volume Voxelator
sci-chemistry/tinker
Molecular modeling package that includes force fields, such as AMBER and CHARMM
sci-chemistry/wxmacmolplt
Chemical 3D graphics program with GAMESS input builder
sci-chemistry/GromacsWrapper
Python framework for Gromacs
sci-chemistry/MDAnalysis
A python library to analyze and manipulate molecular dynamics trajectories
sci-chemistry/ParmEd
Parameter and topology file editor and molecular mechanical simulator engine
sci-chemistry/avogadro2
Advanced molecule editor and visualizer 2
sci-chemistry/chemex
Program to fit chemical exchange induced shift and relaxation data
sci-chemistry/gromacs
The ultimate molecular dynamics simulation package
sci-chemistry/mdtraj
Read, write and analyze MD trajectories with only a few lines of Python code
sci-chemistry/molsketch
Drawing tool for 2D molecular structures
sci-chemistry/openbabel
Interconverts file formats used in molecular modeling
sci-chemistry/pdbcat
Manipulate and process PDB files using tools such as Perl, awk, etc
sci-chemistry/pdbmat
Calculate Tirion's model from pdb structures
sci-chemistry/propka
pKa-value prediction of ionizable groups in protein and protein-ligand complexes
sci-chemistry/pymol
Python-extensible molecular graphics system
sci-chemistry/tm-align
Quick & Accurate Structural Alignment
sci-chemistry/vmd
Visual Molecular Dynamics
sci-electronics/netgen
LVS tool (layout versus schematic comparison)
sci-electronics/irsim
IRSIM is a "switch-level" simulator
sci-electronics/petrify
Synthesize Petri nets into asynchronous circuits
sci-electronics/gnucap
GNUCap is the GNU Circuit Analysis Package
sci-electronics/geda-suite
Metapackage for all components for a full-featured gEDA/gaf system
sci-electronics/gerbv
A RS-274X (Gerber) and NC drill (Excellon) file viewer
sci-electronics/sigrok-cli
Command-line client for the sigrok logic analyzer software
sci-electronics/kicad-meta
Electronic Schematic and PCB design tools (meta package)
sci-electronics/electronics-menu
Creates an "Electronics" desktop menu
sci-electronics/electric
Complete Electronic Design Automation system for many forms of circuit design
sci-electronics/espresso-ab
POSIX compliant version of the espresso logic minimization tool
sci-electronics/fasthenry
Three dimensional inductance computation program, Whiteley Research version
sci-electronics/geda
GPL Electronic Design Automation (gEDA):gaf core package
sci-electronics/ghdl
Open-source analyzer, compiler, and simulator for VHDL 2008/93/87
sci-electronics/gnetman
A GNU Netlist Manipulation Library
sci-electronics/gsmc
A GTK program for doing Smith Chart calculations
sci-electronics/gspeakers
GTK based loudspeaker enclosure and crossovernetwork designer
sci-electronics/gspiceui
GUI frontend for Ngspice and Gnucap
sci-electronics/gtkwave
Wave viewer for LXT, LXT2, VZT, GHW and standard Verilog VCD/EVCD files
sci-electronics/gwave
Analog waveform viewer for SPICE-like simulations
sci-electronics/iverilog
A Verilog simulation and synthesis tool
sci-electronics/labone
Platform independent instrument control for Zurich Instruments devices
sci-electronics/ngspice
The Next Generation Spice (Electronic Circuit Simulator)
sci-electronics/nvc
NVC is a VHDL compiler and simulator
sci-electronics/pcb
GPL Electronic Design Automation: Printed Circuit Board editor
sci-electronics/puff
microwave CAD software
sci-electronics/spice
general-purpose circuit simulation program