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sci-astronomy/stellarium
3D photo-realistic skies in real time
sci-biology/gmap
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
sci-biology/iqpnni
Important Quartet Puzzling and NNI Operation
sci-biology/kalign
Global and progressive multiple sequence alignment
sci-biology/biosql
A generic bioinformatics relational database model
sci-biology/trf
Tandem Repeats Finder
sci-biology/aaindex
Amino acid indices and similarity matrices
sci-biology/clustalw
General purpose multiple alignment program for DNA and proteins
sci-biology/cutg
Codon usage tables calculated from GenBank
sci-biology/embassy
A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
sci-biology/mrbayes
Bayesian Inference of Phylogeny
sci-biology/prints
A protein motif fingerprint database
sci-biology/profphd
Secondary structure and solvent accessibility predictor
sci-biology/prosite
A protein families and domains database
sci-biology/rebase
A restriction enzyme database
sci-biology/update-blastdb
update_blastdb.pl for local blast db maintainance
sci-biology/finchtv
Graphical viewer for chromatogram files
sci-biology/STAR
STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays
sci-biology/abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
sci-biology/amap
Protein multiple-alignment-based sequence annealing
sci-biology/augustus
Eukaryotic gene predictor
sci-biology/bfast
Blat-like Fast Accurate Search Tool
sci-biology/biogrep
Multithreaded tool for matching large sets of patterns against biosequence DBs
sci-biology/blat
The BLAST-Like Alignment Tool, a fast genomic sequence aligner
sci-biology/bwa
Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner
sci-biology/cd-hit
Clustering Database at High Identity with Tolerance
sci-biology/clustal-omega
Scalable multiple alignment of protein sequences
sci-biology/clustalw-mpi
An MPI implemention of the ClustalW general purpose multiple alignment algorithm
sci-biology/dialign-tx
Greedy and progressive approaches for segment-based multiple sequence alignment
sci-biology/dialign2
Multiple sequence alignment
sci-biology/elph
Estimated Locations of Pattern Hits - Motif finder program
sci-biology/embassy-cbstools
EMBOSS integrated version of Applications from the CBS group
sci-biology/embassy-clustalomega
EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
sci-biology/embassy-domainatrix
EMBOSS integrated version of Protein domain analysis add-on package
sci-biology/embassy-domalign
EMBOSS integrated version of Protein domain alignment add-on package
sci-biology/embassy-domsearch
EMBOSS integrated version of Protein domain search add-on package
sci-biology/embassy-emnu
EMBOSS integrated version of Simple menu of EMBOSS applications
sci-biology/embassy-esim4
EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
sci-biology/embassy-hmmer
EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
sci-biology/embassy-iprscan
EMBOSS integrated version of InterProScan motif detection add-on package
sci-biology/embassy-mse
EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
sci-biology/embassy-phylipnew
EMBOSS integrated version of The Phylogeny Inference Package
sci-biology/embassy-signature
EMBOSS integrated version of Protein signature add-on package
sci-biology/embassy-structure
EMBOSS integrated version of Protein structure add-on package
sci-biology/embassy-topo
EMBOSS integrated version of Transmembrane protein display
sci-biology/embassy-vienna
EMBOSS integrated version of Vienna RNA package - RNA folding
sci-biology/emboss
The European Molecular Biology Open Software Suite - A sequence analysis package
sci-biology/eugene
Prokaryotic and Eukaryotic gene predictor
sci-biology/exonerate
Generic tool for pairwise sequence comparison
sci-biology/fasta
FASTA is a DNA and Protein sequence alignment software package