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dev-cpp/muParser

Library for parsing mathematical expressions

dev-cpp/tbb

High level abstract threading library

dev-cpp/asio

Asynchronous Network Library

dev-cpp/ctemplate

A simple but powerful template language for C++

dev-cpp/gflags

Google's C++ argument parsing library

kde-misc/krename

Powerful batch file renamer

kde-misc/tellico

Collection manager based on KDE Frameworks

kde-misc/skanlite

Simple image scanning application based on libksane and KDE Frameworks

kde-misc/rsibreak

Small utility which bothers you at certain intervals

sys-apps/dtc

Open Firmware device tree compiler

sys-apps/findutils

GNU utilities for finding files

sys-apps/pkgcore

a framework for package management

sys-apps/coreutils

Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)

sys-apps/keyutils

Linux Key Management Utilities

sys-apps/fakeroot

A fake root environment by means of LD_PRELOAD and SysV IPC (or TCP) trickery

sys-apps/flashrom

Utility for reading, writing, erasing and verifying flash ROM chips

sys-apps/less

Excellent text file viewer

sys-apps/ack

ack is a tool like grep, optimized for programmers

sys-apps/rng-tools

Daemon to use hardware random number generators

app-pda/pilot-link

Suite of tools for moving data between a Palm device and a desktop

app-pda/libplist

Support library to deal with Apple Property Lists (Binary & XML)

games-strategy/freecol

An open source clone of the game Colonization

sys-process/procps

standard informational utilities and process-handling tools

sys-process/psmisc

A set of tools that use the proc filesystem

sci-biology/bioperl-db

Perl tools for bioinformatics - Perl API that accesses the BioSQL schema

sci-biology/bioperl-network

Perl tools for bioinformatics - Analysis of protein-protein interaction networks

sci-biology/hmmer

Sequence analysis using profile hidden Markov models

sci-biology/bioperl-run

Perl wrapper modules for key bioinformatics applications

sci-biology/bowtie

Popular short read aligner for Next-generation sequencing data

sci-biology/bioperl

Perl tools for bioinformatics - Core modules

sci-biology/exonerate

Generic tool for pairwise sequence comparison

app-dicts/verbiste

French conjugation system

app-dicts/gwaei

Japanese-English Dictionary for GNOME

dev-python/mpi4py

Message Passing Interface for Python

app-editors/diakonos

A Linux editor for the masses

dev-perl/MooseX-Types-Path-Class

A Path::Class type library for Moose

dev-python/Whoosh

Fast, pure-Python full text indexing, search and spell checking library

dev-perl/Modern-Perl

Enable all of the features of Modern Perl with one import

dev-perl/HTML-Template-Pro

Perl/XS module to use HTML Templates from CGI scripts

dev-perl/Devel-SimpleTrace

See where you code warns and dies using stack traces

dev-perl/local-lib

Create and use a local lib/ for perl modules with PERL5LIB

dev-perl/Devel-NYTProf

Powerful feature-rich perl source code profiler

dev-perl/Carp-Always

Warns and dies noisily with stack backtraces

dev-perl/MooseX-SimpleConfig

A Moose role for setting attributes from a simple configfile

dev-perl/Data-Serializer

Modules that serialize data structures

dev-perl/MooseX-ConfigFromFile

An abstract Moose role for setting attributes from a configfile

dev-perl/List-Compare

Manipulation of electronic mail addresses

dev-python/pyscard

Smart card support in python

dev-perl/IO-TieCombine

produce tied (and other) separate but combined variables

dev-perl/Config-MVP

Multivalue-property package-oriented configuration