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sci-biology/hmmer
Sequence analysis using profile hidden Markov models
sci-biology/unafold
Unified Nucleic Acid Folding and hybridization package
sci-biology/bedtools
Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
sci-biology/bioperl
Perl tools for bioinformatics - Core modules
sci-biology/bioperl-db
Perl tools for bioinformatics - Perl API that accesses the BioSQL schema
sci-biology/bioperl-network
Perl tools for bioinformatics - Analysis of protein-protein interaction networks
sci-biology/bioperl-run
Perl wrapper modules for key bioinformatics applications
sci-biology/bowtie
Popular short read aligner for Next-generation sequencing data
sci-biology/kallisto
Near-optimal RNA-Seq quantification
sci-biology/pysam
Python interface for the SAM/BAM sequence alignment and mapping format
sci-chemistry/dssp
The protein secondary structure standard
sci-chemistry/psi
Suite for ab initio quantum chemistry computing various molecular properties
sci-chemistry/GromacsWrapper
Python framework for Gromacs
sci-chemistry/MDAnalysis
A python library to analyze and manipulate molecular dynamics trajectories
sci-chemistry/ParmEd
Parameter and topology file editor and molecular mechanical simulator engine
sci-chemistry/chemex
Program to fit chemical exchange induced shift and relaxation data
sci-chemistry/gromacs
The ultimate molecular dynamics simulation package
sci-chemistry/mdtraj
Read, write and analyze MD trajectories with only a few lines of Python code
sci-chemistry/openbabel
Interconverts file formats used in molecular modeling
sci-chemistry/propka
pKa-value prediction of ionizable groups in protein and protein-ligand complexes
sci-chemistry/pymol
Python-extensible molecular graphics system
sci-electronics/ngspice
The Next Generation Spice (Electronic Circuit Simulator)
sci-electronics/nvc
NVC is a VHDL compiler and simulator
sci-electronics/pcb
GPL Electronic Design Automation: Printed Circuit Board editor
sci-electronics/kicad
Electronic Schematic and PCB design tools
sci-electronics/ktechlab
IDE for microcontrollers and electronics
sci-electronics/librepcb
Free EDA software to develop printed circuit boards
sci-geosciences/folium
Python Data, Leaflet.js Maps
sci-geosciences/geocode-glib
GLib helper library for geocoding services
sci-geosciences/gpsd
GPS daemon and library for USB/serial GPS devices and GPS/mapping clients
sci-geosciences/mapserver
Development environment for building spatially enabled webapps
sci-geosciences/pymap3d
Python 3-D coordinate conversions
sci-geosciences/qgis
User friendly Geographic Information System
sci-geosciences/routino
Routing application based on openstreetmap data
sci-geosciences/s2geometry
Computational geometry and spatial indexing on the sphere
sci-libs/libsemigroups
C++ library for semigroups and monoids
sci-libs/coinor-alps
COIN-OR Framework for implementing parallel graph search algorithms
sci-libs/coinor-bcp
COIN-OR Branch-Cut-Price Framework
sci-libs/coinor-bcps
COIN-OR BiCePS data handling library
sci-libs/coinor-blis
COIN-OR BiCePS Linear Integer Solver
sci-libs/coinor-bonmin
COIN-OR Basic Open-source Nonlinear Mixed INteger programming
sci-libs/coinor-cbc
COIN-OR branch-and-cut mixed integer program solver
sci-libs/coinor-cgl
COIN-OR cut-generation library
sci-libs/coinor-dip
COIN-OR Decomposition in Integer Programming library
sci-libs/coinor-osi
COIN-OR Open Solver Interface
sci-libs/coinor-symphony
COIN-OR solver for mixed-integer linear programs
sci-libs/coinor-vol
COIN-OR volume algorithm linear program solver
sci-libs/ccolamd
Constrained Column approximate minimum degree ordering algorithm
sci-libs/colamd
Column approximate minimum degree ordering algorithm
sci-libs/ldl
Simple but educational LDL^T matrix factorization algorithm