sci-ml/onnx
Open Neural Network Exchange (ONNX)
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ChangeLog
commit 0306d7a366cfc9dff3eb3051bb2ec3c1b7dad1e7
Author: lucascouts <lucascs@protonmail.com>
Date: Thu Nov 5 09:54:12 2026 -0300
mod(sci-ml/onnx-1.20.1, metadata/md5-cache): fix python3_15 wheel copy of abi3 module
Python 3.15 lists ".abi3-x86_64-linux-gnu.so" first in EXTENSION_SUFFIXES,
so setuptools expects onnx_cpp2py_export.abi3-x86_64-linux-gnu.so while
nanobind's CMake still writes onnx_cpp2py_export.abi3.so, and BuildExt
dies with "can't copy ... doesn't exist". src_prepare now makes setup.py
fall back to the .abi3.so file (3.15 imports both names; no-op on
3.12-3.14), guarded by grep -qF so a moved line fails loudly.
No revbump: no python3_15 build ever succeeded, other targets unchanged.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 6c7d232d5ea08f0c10953e02f27886bc52072ca3
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 14:23:54 2026 -0300
dev-libs/boost: mask 1.92; sci-libs/onnxruntime: pin <sci-ml/onnx-1.23
- profiles/package.mask: =dev-libs/boost-1.92.0-r1 until it is tested here.
::gentoo ships it unkeyworded while bug 983599 is open, and its subslot
change rebuilds every boost consumer. The python3_15 copy of 1.91.0-r3
keeps 3.15-only systems resolvable.
- sci-libs/onnxruntime-1.31.1: depend on <sci-ml/onnx-1.23 everywhere it
names onnx. It was built against onnx 1.22, and libonnx has no versioned
soname, so nothing would force a rebuild after the 1.23.2 bump.
- sci-ml/onnx: restore the python3_15 mirror of 1.20.1 (what the pin
resolves to), owned by a held, exact-series @1.20 claim record.
Checked: with dev-lang/python:3.14 masked, emerge -pvuDN --with-bdeps=y
--changed-deps=y @world, with the mirrors selected from ::bentoo, resolves
with exit 0 (507 packages): boost-1.91.0-r3, onnx-1.20.1 and
clang-23.1.4-r1 all come from ::bentoo, and neither python 3.13 nor 3.14 is
pulled in. pkgcheck is clean on onnx and onnxruntime, and
autoupdate --lint passes.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 431aa64a312336a960cd96e5a628fe178887c93e
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 13:10:01 2026 -0300
fix(sci-ml/onnx-1.23.2, media-gfx/fontforge-20251009, dev-debug/rr-5.10.0): make the autoupdate bumps correct for their versions
sci-ml/onnx: 1.23.2 has no setup.py, so the Python build uses
scikit-build-core with CMake args via DISTUTILS_ARGS. The extension is
configured with BUILD_SHARED_LIBS=OFF because 1.23.2 rejects it together
with ONNX_BUILD_PYTHON. ml-dtypes>=0.5.4 and protobuf>=6.31.1 floors come
from pyproject.toml.
media-gfx/fontforge: upstream removed the Xlib GUI. USE=X is dropped, the
GTK GUI now needs gtkmm:3.0, and the new HarfBuzz shaper sits behind a
local USE=harfbuzz. The three 20230101 patches are upstream and dropped,
and so is libltdl, which the sources no longer use.
dev-debug/rr: the glibc-2.42 termio patch is upstream and dropped, as in
::gentoo's rr-9999. The OpenRC script stays.
All three: KEYWORDS ~amd64 only, accurate comment headers and
BENTOO-DIVERGENCE tags, packages.toml `patched` text, md5-cache.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 7a11248dc65fba79675ab42334e4da10d53e6774
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 12:26:51 2026 -0300
add(www-client/opera-139.0.6053.38), add(metadata/{md5-cache/app-emulation/virt-firmware-26.10, md5-cache/app-office/wordcraft-bin-0.15.1, md5-cache/app-text/pdfcraft-bin-0.18.1, md5-cache/dev-debug/rr-5.10.0, md5-cache/dev-libs/boost-1.92.0, md5-cache/dev-python/openai-3.45.0, md5-cache/dev-util/antigravity-hub-bin-2.29.0.5723181030440960, md5-cache/dev-util/gtk-doc-1.37.0, md5-cache/dev-util/mesa_clc-27.0.0_pre20261104, md5-cache/dev-util/openchamber-bin-2.6.1, md5-cache/dev-util/qwen-code-0.26.7, md5-cache/llvm-core/clang-23.1.5, md5-cache/media-gfx/fontforge-20251009, md5-cache/media-libs/mesa-27.0.0_pre20261104, md5-cache/media-libs/opencolorio-2.6.0, md5-cache/media-libs/openimageio-3.2.2.0, md5-cache/media-libs/vulkan-layers-1.4.367_p20261104, md5-cache/net-misc/postman-bin-12.35.2, md5-cache/sci-mathematics/manifold-3.5.4, md5-cache/sci-ml/ik_llama-cpp-0_pre20261104, md5-cache/sci-ml/llama-cpp-0.9.0, md5-cache/sci-ml/onnx-1.23.2, md5-cache/sys-apps/dtc-1.8.1, md5-cache/sys-apps/usbutils-020, md5-cache/sys-apps/util-linux-2.42.4, md5-cache/sys-block/fio-3.43, md5-cache/www-client/librewolf-bin-159.0.1_p1, md5-cache/www-client/opera-139.0.6053.22, md5-cache/www-client/opera-139.0.6053.38, md5-cache/x11-misc/libinput-gestures-2.81}, g.json), del(metadata/{md5-cache/app-emulation/virt-firmware-26.9, md5-cache/app-office/wordcraft-bin-0.15.0, md5-cache/app-text/pdfcraft-bin-0.18.0, md5-cache/dev-debug/rr-5.9.0-r1, md5-cache/dev-libs/boost-1.91.0-r3, md5-cache/dev-python/openai-3.44.0, md5-cache/dev-util/antigravity-hub-bin-2.28.2.5937220255875072, md5-cache/dev-util/gtk-doc-1.36.1, md5-cache/dev-util/mesa_clc-27.0.0_pre20261103, md5-cache/dev-util/openchamber-bin-2.6.0, md5-cache/dev-util/qwen-code-0.26.6, md5-cache/llvm-core/clang-23.1.4-r1, md5-cache/media-gfx/fontforge-20230101-r2, md5-cache/media-libs/mesa-27.0.0_pre20261103, md5-cache/media-libs/opencolorio-2.4.2, md5-cache/media-libs/openimageio-3.1.7.0-r1, md5-cache/media-libs/vulkan-layers-1.4.367_p20261103, md5-cache/net-misc/postman-bin-12.35.1, md5-cache/sci-mathematics/manifold-3.5.2, md5-cache/sci-ml/ik_llama-cpp-0_pre20261103, md5-cache/sci-ml/llama-cpp-0.8.0, md5-cache/sci-ml/onnx-1.20.1, md5-cache/sys-apps/dtc-1.7.2-r2, md5-cache/sys-apps/usbutils-019, md5-cache/sys-apps/util-linux-2.42.3, md5-cache/sys-block/fio-3.41, md5-cache/www-client/librewolf-bin-159.0_p1, md5-cache/x11-misc/libinput-gestures-2.80}), mod(.autoupdate/packages.toml), up(app-emulation/virt-firmware-26.9 -> 26.10, app-office/wordcraft-bin-0.15.0 -> 0.15.1, app-text/pdfcraft-bin-0.18.0 -> 0.18.1, dev-debug/rr-5.9.0-r1 -> 5.10.0, dev-libs/boost-1.91.0-r3 -> 1.92.0, dev-python/openai-3.44.0 -> 3.45.0, dev-util/{antigravity-hub-bin-2.28.2.5937220255875072 -> 2.29.0.5723181030440960, gtk-doc-1.36.1 -> 1.37.0, mesa_clc-27.0.0_pre20261103 -> 27.0.0_pre20261104, openchamber-bin-2.6.0 -> 2.6.1, qwen-code-0.26.6 -> 0.26.7}, llvm-core/clang-23.1.4-r1 -> 23.1.5, media-gfx/fontforge-20230101-r2 -> 20251009, media-libs/{mesa-27.0.0_pre20261103 -> 27.0.0_pre20261104, opencolorio-2.4.2 -> 2.6.0, openimageio-3.1.7.0-r1 -> 3.2.2.0, vulkan-layers-1.4.367_p20261103 -> 1.4.367_p20261104}, net-misc/postman-bin-12.35.1 -> 12.35.2, sci-mathematics/manifold-3.5.2 -> 3.5.4, sci-ml/{ik_llama-cpp-0_pre20261103 -> 0_pre20261104, llama-cpp-0.8.0 -> 0.9.0, onnx-1.20.1 -> 1.23.2}, sys-apps/{dtc-1.7.2-r2 -> 1.8.1, usbutils-019 -> 020, util-linux-2.42.3 -> 2.42.4}, sys-block/fio-3.41 -> 3.43, www-client/librewolf-bin-159.0_p1 -> 159.0.1_p1, x11-misc/libinput-gestures-2.80 -> 2.81)
commit 8a7147085a77223b14b1173e57b08c98c80b6fb3
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 04:53:37 2026 -0300
python3_15: mirror 75 ::gentoo packages and widen bentoo's own
Python 3.15 is final, but with PYTHON_TARGETS=python3_15 @world stopped at
95 installed packages whose PYTHON_COMPAT ends at 3.14 (first one hit:
sys-apps/util-linux). ::gentoo master has added 3.15 to none of them yet.
- Mirror 75 ::gentoo packages (76 ebuilds; clang has two slots) at the same
version, with python3_15 added to PYTHON_COMPAT and nothing else. Every
diverging axis carries a BENTOO-DIVERGENCE tag, and each copy says it goes
away once ::gentoo lists python3_15. Exceptions:
- app-admin/ansible-core: backport of upstream commit 405a6052b0 (PR #86976).
2.21 dies at import on 3.15 (dataclasses._is_type is gone), and upstream
will not backport the fix (ansible/ansible#87677).
- dev-debug/rr, app-accessibility/speech-dispatcher: OpenRC counterparts for
their systemd units (overlay rule). app-admin/system-config-printer goes on
check-openrc-coverage.sh's allowlist instead, because its unit is a
udev-triggered template and no init script can stand in for it.
- Widen 19 bentoo packages that blocked @world, plus 44 that only use Python at
build time, and eclass/gstreamer-meson.eclass, which covers ~70 gst packages.
- Not widened: sys-kernel/bentoo-kernel (its PYTHON_COMPAT lives in ::gentoo's
kernel-build.eclass) and www-client/librewolf (no 3.15 build evidence).
- .autoupdate: 68 new records, 6 re-enabled, and app-admin/ansible-core held
(2.22 would break ansible 14). iotop and meson-format-array have nothing to
probe and are listed in dead-upstreams.md.
How this was checked:
- Per-package research: upstream CI, Fedora rawhide builds on 3.15, and a grep
for every API 3.15 removed.
- Real builds against 3.15: media-gfx/blender in full (9030 targets, runs on
3.15.2), plus the C bindings of util-linux, libcap-ng, vim and pam_wrapper.
- emerge -pvuDN --with-bdeps=y @world resolves against this tree with
PYTHON_TARGETS="python3_14 python3_15" and PYTHON_SINGLE_TARGET="-* python3_15".
3.15 only is not reachable yet: 85 ::gentoo build-time-only packages (glibc,
gcc, llvm, ...) still stop at 3.14.
- gentoo-parity.sh adds no ALIGN or UNDOCUMENTED row. Its one new
[missing]/[orphans] hit, x11-misc/libinput-gestures, is a parser false
positive on "$/$"-...
- check-openrc-coverage.sh passes; pkgcheck is clean on every touched package.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Author: lucascouts <lucascs@protonmail.com>
Date: Thu Nov 5 09:54:12 2026 -0300
mod(sci-ml/onnx-1.20.1, metadata/md5-cache): fix python3_15 wheel copy of abi3 module
Python 3.15 lists ".abi3-x86_64-linux-gnu.so" first in EXTENSION_SUFFIXES,
so setuptools expects onnx_cpp2py_export.abi3-x86_64-linux-gnu.so while
nanobind's CMake still writes onnx_cpp2py_export.abi3.so, and BuildExt
dies with "can't copy ... doesn't exist". src_prepare now makes setup.py
fall back to the .abi3.so file (3.15 imports both names; no-op on
3.12-3.14), guarded by grep -qF so a moved line fails loudly.
No revbump: no python3_15 build ever succeeded, other targets unchanged.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 6c7d232d5ea08f0c10953e02f27886bc52072ca3
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 14:23:54 2026 -0300
dev-libs/boost: mask 1.92; sci-libs/onnxruntime: pin <sci-ml/onnx-1.23
- profiles/package.mask: =dev-libs/boost-1.92.0-r1 until it is tested here.
::gentoo ships it unkeyworded while bug 983599 is open, and its subslot
change rebuilds every boost consumer. The python3_15 copy of 1.91.0-r3
keeps 3.15-only systems resolvable.
- sci-libs/onnxruntime-1.31.1: depend on <sci-ml/onnx-1.23 everywhere it
names onnx. It was built against onnx 1.22, and libonnx has no versioned
soname, so nothing would force a rebuild after the 1.23.2 bump.
- sci-ml/onnx: restore the python3_15 mirror of 1.20.1 (what the pin
resolves to), owned by a held, exact-series @1.20 claim record.
Checked: with dev-lang/python:3.14 masked, emerge -pvuDN --with-bdeps=y
--changed-deps=y @world, with the mirrors selected from ::bentoo, resolves
with exit 0 (507 packages): boost-1.91.0-r3, onnx-1.20.1 and
clang-23.1.4-r1 all come from ::bentoo, and neither python 3.13 nor 3.14 is
pulled in. pkgcheck is clean on onnx and onnxruntime, and
autoupdate --lint passes.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 431aa64a312336a960cd96e5a628fe178887c93e
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 13:10:01 2026 -0300
fix(sci-ml/onnx-1.23.2, media-gfx/fontforge-20251009, dev-debug/rr-5.10.0): make the autoupdate bumps correct for their versions
sci-ml/onnx: 1.23.2 has no setup.py, so the Python build uses
scikit-build-core with CMake args via DISTUTILS_ARGS. The extension is
configured with BUILD_SHARED_LIBS=OFF because 1.23.2 rejects it together
with ONNX_BUILD_PYTHON. ml-dtypes>=0.5.4 and protobuf>=6.31.1 floors come
from pyproject.toml.
media-gfx/fontforge: upstream removed the Xlib GUI. USE=X is dropped, the
GTK GUI now needs gtkmm:3.0, and the new HarfBuzz shaper sits behind a
local USE=harfbuzz. The three 20230101 patches are upstream and dropped,
and so is libltdl, which the sources no longer use.
dev-debug/rr: the glibc-2.42 termio patch is upstream and dropped, as in
::gentoo's rr-9999. The OpenRC script stays.
All three: KEYWORDS ~amd64 only, accurate comment headers and
BENTOO-DIVERGENCE tags, packages.toml `patched` text, md5-cache.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
commit 7a11248dc65fba79675ab42334e4da10d53e6774
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 12:26:51 2026 -0300
add(www-client/opera-139.0.6053.38), add(metadata/{md5-cache/app-emulation/virt-firmware-26.10, md5-cache/app-office/wordcraft-bin-0.15.1, md5-cache/app-text/pdfcraft-bin-0.18.1, md5-cache/dev-debug/rr-5.10.0, md5-cache/dev-libs/boost-1.92.0, md5-cache/dev-python/openai-3.45.0, md5-cache/dev-util/antigravity-hub-bin-2.29.0.5723181030440960, md5-cache/dev-util/gtk-doc-1.37.0, md5-cache/dev-util/mesa_clc-27.0.0_pre20261104, md5-cache/dev-util/openchamber-bin-2.6.1, md5-cache/dev-util/qwen-code-0.26.7, md5-cache/llvm-core/clang-23.1.5, md5-cache/media-gfx/fontforge-20251009, md5-cache/media-libs/mesa-27.0.0_pre20261104, md5-cache/media-libs/opencolorio-2.6.0, md5-cache/media-libs/openimageio-3.2.2.0, md5-cache/media-libs/vulkan-layers-1.4.367_p20261104, md5-cache/net-misc/postman-bin-12.35.2, md5-cache/sci-mathematics/manifold-3.5.4, md5-cache/sci-ml/ik_llama-cpp-0_pre20261104, md5-cache/sci-ml/llama-cpp-0.9.0, md5-cache/sci-ml/onnx-1.23.2, md5-cache/sys-apps/dtc-1.8.1, md5-cache/sys-apps/usbutils-020, md5-cache/sys-apps/util-linux-2.42.4, md5-cache/sys-block/fio-3.43, md5-cache/www-client/librewolf-bin-159.0.1_p1, md5-cache/www-client/opera-139.0.6053.22, md5-cache/www-client/opera-139.0.6053.38, md5-cache/x11-misc/libinput-gestures-2.81}, g.json), del(metadata/{md5-cache/app-emulation/virt-firmware-26.9, md5-cache/app-office/wordcraft-bin-0.15.0, md5-cache/app-text/pdfcraft-bin-0.18.0, md5-cache/dev-debug/rr-5.9.0-r1, md5-cache/dev-libs/boost-1.91.0-r3, md5-cache/dev-python/openai-3.44.0, md5-cache/dev-util/antigravity-hub-bin-2.28.2.5937220255875072, md5-cache/dev-util/gtk-doc-1.36.1, md5-cache/dev-util/mesa_clc-27.0.0_pre20261103, md5-cache/dev-util/openchamber-bin-2.6.0, md5-cache/dev-util/qwen-code-0.26.6, md5-cache/llvm-core/clang-23.1.4-r1, md5-cache/media-gfx/fontforge-20230101-r2, md5-cache/media-libs/mesa-27.0.0_pre20261103, md5-cache/media-libs/opencolorio-2.4.2, md5-cache/media-libs/openimageio-3.1.7.0-r1, md5-cache/media-libs/vulkan-layers-1.4.367_p20261103, md5-cache/net-misc/postman-bin-12.35.1, md5-cache/sci-mathematics/manifold-3.5.2, md5-cache/sci-ml/ik_llama-cpp-0_pre20261103, md5-cache/sci-ml/llama-cpp-0.8.0, md5-cache/sci-ml/onnx-1.20.1, md5-cache/sys-apps/dtc-1.7.2-r2, md5-cache/sys-apps/usbutils-019, md5-cache/sys-apps/util-linux-2.42.3, md5-cache/sys-block/fio-3.41, md5-cache/www-client/librewolf-bin-159.0_p1, md5-cache/x11-misc/libinput-gestures-2.80}), mod(.autoupdate/packages.toml), up(app-emulation/virt-firmware-26.9 -> 26.10, app-office/wordcraft-bin-0.15.0 -> 0.15.1, app-text/pdfcraft-bin-0.18.0 -> 0.18.1, dev-debug/rr-5.9.0-r1 -> 5.10.0, dev-libs/boost-1.91.0-r3 -> 1.92.0, dev-python/openai-3.44.0 -> 3.45.0, dev-util/{antigravity-hub-bin-2.28.2.5937220255875072 -> 2.29.0.5723181030440960, gtk-doc-1.36.1 -> 1.37.0, mesa_clc-27.0.0_pre20261103 -> 27.0.0_pre20261104, openchamber-bin-2.6.0 -> 2.6.1, qwen-code-0.26.6 -> 0.26.7}, llvm-core/clang-23.1.4-r1 -> 23.1.5, media-gfx/fontforge-20230101-r2 -> 20251009, media-libs/{mesa-27.0.0_pre20261103 -> 27.0.0_pre20261104, opencolorio-2.4.2 -> 2.6.0, openimageio-3.1.7.0-r1 -> 3.2.2.0, vulkan-layers-1.4.367_p20261103 -> 1.4.367_p20261104}, net-misc/postman-bin-12.35.1 -> 12.35.2, sci-mathematics/manifold-3.5.2 -> 3.5.4, sci-ml/{ik_llama-cpp-0_pre20261103 -> 0_pre20261104, llama-cpp-0.8.0 -> 0.9.0, onnx-1.20.1 -> 1.23.2}, sys-apps/{dtc-1.7.2-r2 -> 1.8.1, usbutils-019 -> 020, util-linux-2.42.3 -> 2.42.4}, sys-block/fio-3.41 -> 3.43, www-client/librewolf-bin-159.0_p1 -> 159.0.1_p1, x11-misc/libinput-gestures-2.80 -> 2.81)
commit 8a7147085a77223b14b1173e57b08c98c80b6fb3
Author: lucascouts <lucascs@protonmail.com>
Date: Wed Nov 4 04:53:37 2026 -0300
python3_15: mirror 75 ::gentoo packages and widen bentoo's own
Python 3.15 is final, but with PYTHON_TARGETS=python3_15 @world stopped at
95 installed packages whose PYTHON_COMPAT ends at 3.14 (first one hit:
sys-apps/util-linux). ::gentoo master has added 3.15 to none of them yet.
- Mirror 75 ::gentoo packages (76 ebuilds; clang has two slots) at the same
version, with python3_15 added to PYTHON_COMPAT and nothing else. Every
diverging axis carries a BENTOO-DIVERGENCE tag, and each copy says it goes
away once ::gentoo lists python3_15. Exceptions:
- app-admin/ansible-core: backport of upstream commit 405a6052b0 (PR #86976).
2.21 dies at import on 3.15 (dataclasses._is_type is gone), and upstream
will not backport the fix (ansible/ansible#87677).
- dev-debug/rr, app-accessibility/speech-dispatcher: OpenRC counterparts for
their systemd units (overlay rule). app-admin/system-config-printer goes on
check-openrc-coverage.sh's allowlist instead, because its unit is a
udev-triggered template and no init script can stand in for it.
- Widen 19 bentoo packages that blocked @world, plus 44 that only use Python at
build time, and eclass/gstreamer-meson.eclass, which covers ~70 gst packages.
- Not widened: sys-kernel/bentoo-kernel (its PYTHON_COMPAT lives in ::gentoo's
kernel-build.eclass) and www-client/librewolf (no 3.15 build evidence).
- .autoupdate: 68 new records, 6 re-enabled, and app-admin/ansible-core held
(2.22 would break ansible 14). iotop and meson-format-array have nothing to
probe and are listed in dead-upstreams.md.
How this was checked:
- Per-package research: upstream CI, Fedora rawhide builds on 3.15, and a grep
for every API 3.15 removed.
- Real builds against 3.15: media-gfx/blender in full (9030 targets, runs on
3.15.2), plus the C bindings of util-linux, libcap-ng, vim and pam_wrapper.
- emerge -pvuDN --with-bdeps=y @world resolves against this tree with
PYTHON_TARGETS="python3_14 python3_15" and PYTHON_SINGLE_TARGET="-* python3_15".
3.15 only is not reachable yet: 85 ::gentoo build-time-only packages (glibc,
gcc, llvm, ...) still stop at 3.14.
- gentoo-parity.sh adds no ALIGN or UNDOCUMENTED row. Its one new
[missing]/[orphans] hit, x11-misc/libinput-gestures, is a parser false
positive on "$/$"-...
- check-openrc-coverage.sh passes; pkgcheck is clean on every touched package.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

