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sci-chemistry/vmd

Visual Molecular Dynamics

Screenshots

  • vmd-1.9.1-r2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: jtriley (layman)
  • vmd-1.9.1-r2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: funtoo (distro)
  • vmd-1.9.1-r2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: gentoo (distro)
  • vmd-1.9.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: funtoo (distro)
  • vmd-1.9.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: gentoo (distro)
  • vmd-1.9.1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: funtoo (distro)
  • vmd-1.9.1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    cuda msms povray tachyon xinerama

    View      Download      Browse     License: vmd   
    Overlay: gentoo (distro)

ChangeLog

# ChangeLog for sci-chemistry/vmd
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.58 2013/10/02 11:39:48 jlec Exp $

02 Oct 2013; Justin Lecher <jlec@gentoo.org> vmd-1.9.1-r2.ebuild,
+files/vmd-1.9.1-cuda-device_ptr.patch:
Add fix for cuda 5.5

02 Oct 2013; Justin Lecher <jlec@gentoo.org> vmd-1.9.1-r2.ebuild:
Update dependency for tk

01 Mar 2013; Justin Lecher <jlec@gentoo.org> vmd-1.9.1.ebuild,
vmd-1.9.1-r1.ebuild, vmd-1.9.1-r2.ebuild:
Fix tcl/tk API to version 8.5, #451824; Upstream says it will be fixed in
version 1.9.2

24 Jan 2013; Justin Lecher <jlec@gentoo.org> vmd-1.9.1.ebuild,
vmd-1.9.1-r1.ebuild:
Force py2, #450716


18 Jan 2013; Christoph Junghans <ottxor@gentoo.org> vmd-1.9.1-r2.ebuild:
fix deps

*vmd-1.9.1-r2 (11 Jan 2013)

11 Jan 2013; Justin Lecher <jlec@gentoo.org> +vmd-1.9.1-r2.ebuild,
+files/vmd-1.9.1-tcl8.6.patch, metadata.xml:
Use cuda.eclass and slo-operator for tcl

29 Nov 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.1.ebuild,
vmd-1.9.1-r1.ebuild:
Drop dep on old tk

15 Nov 2012; Christoph Junghans <ottxor@gentoo.org> vmd-1.9.1-r1.ebuild:
fix build on x86

*vmd-1.9.1-r1 (14 Nov 2012)

14 Nov 2012; Justin Lecher <jlec@gentoo.org> +vmd-1.9.1-r1.ebuild:
Fix detection of netcdf; #406737, thanks Reinis Danne preparing the patch;
Loosen dep for cuda support, #406083

24 Sep 2012; Mike Frysinger <vapier@gentoo.org> vmd-1.9.1.ebuild:
QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).

05 Sep 2012; Justin Lecher <jlec@gentoo.org> -vmd-1.8.7-r2.ebuild,
-vmd-1.9.ebuild, vmd-1.9.1.ebuild:
Bumped to EAPI=4; use domenu; drop old

14 Feb 2012; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.9.1.ebuild:
Fix plugin install

*vmd-1.9.1 (14 Feb 2012)

14 Feb 2012; Alexey Shvetsov <alexxy@gentoo.org> +vmd-1.9.1.ebuild:
Version bump =D

10 Jan 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild:
Remove USE=static-libs because this breaks build, #365051

10 Jan 2012; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild, metadata.xml:
Enhance nofetch msg, fix compilation with USE=cuda and gcc != 4.4*, thanks
xarthisius for the help

20 Jul 2011; Pacho Ramos <pacho@gentoo.org> metadata.xml:
Drop maintainer due retirement, bug #105599

15 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
vmd-1.9.ebuild:
FILESDIR is gone, wverything is mirrored now.

13 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
vmd-1.9.ebuild:
Mirrored files aren't fetchrestricted

13 Jun 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
-files/vmd-1.8.7-gentoo.patch, -files/vmd-1.8.7-respect-flags.patch,
vmd-1.9.ebuild, -files/vmd-1.9-gentoo-base.patch,
-files/vmd-1.9-gentoo-plugins.patch, -files/vmd.desktop, -files/vmd.png:
No binaryfiles in VCS please, #370915

27 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.9.ebuild:
Correct version of cuda dep, #360401

*vmd-1.9 (22 Mar 2011)

22 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild,
+vmd-1.9.ebuild, +files/vmd-1.9-gentoo-base.patch,
+files/vmd-1.9-gentoo-plugins.patch, metadata.xml:
Version Bump, #358981; Dropped ppc due to missing KEYWORDS in DEPs

22 Mar 2011; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
Restrict fltk version being able to return includedir

20 Mar 2011; Justin Lecher <jlec@gentoo.org> -vmd-1.8.7-r1.ebuild,
vmd-1.8.7-r2.ebuild:
x11-libs/fltk SLOTMOVE 1.1 -> 1, corrected ebuild accordingly

11 Dec 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
QA on quoting

30 Oct 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r2.ebuild:
Corrected msms DEP to sci-chemistry/msms-bin

21 Aug 2010; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.8.7-r2.ebuild,
metadata.xml:
Add msms and povray to RDEPS as per bug #293504

*vmd-1.8.7-r2 (27 Jul 2010)

27 Jul 2010; Justin Lecher <jlec@gentoo.org>
-files/vmd-1.8.5-config-gentoo.patch,
-files/vmd-1.8.6-config-gentoo.patch,
-files/vmd-1.8.6-fix-crash-on-tcl8.5.patch,
-files/vmd-1.8.6-python-2.5.patch, -files/vmd-1.8.6-tcltk8.5.patch,
vmd-1.8.7-r1.ebuild, +vmd-1.8.7-r2.ebuild, -files/vmd-1.8.7-config.patch,
files/vmd-1.8.7-gentoo.patch, +files/vmd-1.8.7-respect-flags.patch,
-files/vmd-1.8.7-use-bash-startup.patch:
Make it really prefix ready, don't mix CFLAGS/CXXFLAGS,clean old patches

24 Jul 2010; Justin Lecher <jlec@gentoo.org> vmd-1.8.7-r1.ebuild:
Added prefix changes, thanks rei4dan #327517; keyworded for ~-linux prefix

28 May 2010; Justin Lecher <jlec@gentoo.org> -vmd-1.8.6.ebuild,
-vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild:
Removed all non PythonABI compatible ebuilds

*vmd-1.8.7-r1 (18 May 2010)

18 May 2010; Justin Lecher <jlec@gentoo.org> +vmd-1.8.7-r1.ebuild,
files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-gentoo.patch:
Fix for new python ABIs, #316187; building netcdf plugin, #306893, thanks
Kamil Kisiel for the patch; LDFLAGS are respected now; EAPI=3 and basic
fixes for prefix, usability has to be tested

23 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> vmd-1.8.6-r1.ebuild,
vmd-1.8.7.ebuild, metadata.xml:
add tachyon raytracer as rdep

18 Sep 2009; Petteri Räty <betelgeuse@gentoo.org> vmd-1.8.7.ebuild:
Remove built_with_use and use proper DEPEND atoms that work properly for
both tk 8.4 and 8.5 users.

11 Aug 2009; Markus Dittrich <markusle@gentoo.org> vmd-1.8.7.ebuild,
+files/vmd.desktop, +files/vmd.png:
Added desktop entry and vmd icon (#262275).
Thanks much to Bjoern Olausson for creating them.

07 Aug 2009; Markus Dittrich <markusle@gentoo.org> vmd-1.8.7.ebuild,
files/vmd-1.8.7-config.patch:
Remove the EAPI2 check for -truetype and add explicit error logic
so tk-8.4 users can emerge vmd as well. Also updated the config
patch to handle tk8.4 better.

*vmd-1.8.7 (05 Aug 2009)

05 Aug 2009; Markus Dittrich <markusle@gentoo.org> +vmd-1.8.7.ebuild,
+files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-use-bash-startup.patch:
Version bump (fixes bug #262275).

07 Jul 2009; Diego E. Pettenò <flameeyes@gentoo.org> vmd-1.8.6-r1.ebuild:
Use elog for fetch error.

18 May 2009; Jeff Gardner <je_fro@gentoo.org>
+files/vmd-1.8.6-fix-crash-on-tcl8.5.patch:
adding alexxy's patch :)

17 May 2009; Jeff Gardner <je_fro@gentoo.org> +vmd-1.8.6-r1.ebuild:
Fixed by alexxy to work with tcl8.5

*vmd-1.8.6-r1 (17 May 2009)

17 May 2009; Jeff Gardner <je_fro@gentoo.org> +vmd-1.8.6-r1.ebuild:
Fixed by alexxy to work with tcl5.8

12 Nov 2008; Markus Dittrich <markusle@gentoo.org> -vmd-1.8.5.ebuild,
vmd-1.8.6.ebuild:
Restrict fltk to 1.1 slot since vmd is not fltk-2 ready
(see bug #246445). Removed old ebuild.

13 Mar 2008; Markus Dittrich <markusle@gentoo.org>
+files/vmd-1.8.6-tcltk8.5.patch, vmd-1.8.6.ebuild:
Added tcltk-8.5 support (fixes bug #212936).

20 Sep 2007; Markus Dittrich <markusle@gentoo.org>
+files/vmd-1.8.6-python-2.5.patch, vmd-1.8.6.ebuild:
Added patch to fix python-2.5 compile issues on amd64 (fixes bug
#192902). Thanks much to milan hodoscek <milan@cmm.ki.si> for his
patch.

22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; vmd-1.8.5.ebuild,
vmd-1.8.6.ebuild:
Drop virtual/x11 references.

*vmd-1.8.6 (15 Apr 2007)

15 Apr 2007; Markus Dittrich <markusle@gentoo.org>
-files/vmd-1.8.4-config-gentoo.patch, -files/vmd-1.8.4-paratool.patch,
-files/vmd-1.8.4-plugin-autopsf.patch,
+files/vmd-1.8.6-config-gentoo.patch, +vmd-1.8.6.ebuild:
Version bump (fixes bug #174595). Thanks much to Jeffrey Gardner
<je_fro@gentoo.org> for his patch and ebuild.

08 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -vmd-1.8.4.ebuild,
-vmd-1.8.4-r1.ebuild:
QA: Removed unused versions.

07 Jan 2007; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
Replaced backslashes with colons in some sed statements
(see bug #145467).

03 Jan 2007; Jeff Gardner <je_fro@gentoo.org> vmd-1.8.5.ebuild:
added ~amd64

27 Dec 2006; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
Remove netcdf use flag and enable netcdf support by default
since it is needed by the catdcd plugin. This fixes bug #159081.

22 Dec 2006; Markus Dittrich <markusle@gentoo.org>
files/vmd-1.8.5-config-gentoo.patch, vmd-1.8.5.ebuild:
Added netcdf support. This fixes bug #158771.

09 Nov 2006; Markus Dittrich <markusle@gentoo.org> vmd-1.8.5.ebuild:
Enabled IMD functionality. Thanks to Stephane Gagne
<sgagne@rsvs.ulaval.ca> for pointing this out (see bug #154429).

20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
(#148281) Change herd to sci-chemistry from sci.

*vmd-1.8.5 (26 Aug 2006)

26 Aug 2006; Markus Dittrich <markusle@gentoo.org>
-files/vmd-1.8.3-config-gentoo.patch,
+files/vmd-1.8.5-config-gentoo.patch, -vmd-1.8.3.ebuild,
+vmd-1.8.5.ebuild:
Version bump. Also removed some of the old ebuilds.

*vmd-1.8.4-r1 (13 Aug 2006)

13 Aug 2006; Markus Dittrich <markusle@gentoo.org>
+files/vmd-1.8.4-paratool.patch, +vmd-1.8.4-r1.ebuild:
VMD now depends on stride in order to properly display secondary
structure information. Also patched a paratool plugin error under
tcl-8.4.13.

29 Apr 2006; Marien Zwart <marienz@gentoo.org> Manifest:
Fix SHA256 digests.

*vmd-1.8.4 (18 Apr 2006)

18 Apr 2006; Markus Dittrich <markusle@gentoo.org>
+files/vmd-1.8.4-config-gentoo.patch,
+files/vmd-1.8.4-plugin-autopsf.patch, +vmd-1.8.4.ebuild:
Version bump.

21 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>; vmd-1.8.3.ebuild:
Keyword ~ppc, and make changes to the wrapper script that may also fix amd64
and alpha.

14 Feb 2006; Markus Dittrich <markusle@gentoo.org> Manifest:
Fixed bogus .Chanlog.swp file entry in Manifest.

*vmd-1.8.3 (10 Feb 2006)

10 Feb 2006; Markus Dittrich <markusle@gentoo.org>
+files/vmd-1.8.3-config-gentoo.patch, +metadata.xml, +vmd-1.8.3.ebuild:
Initial import.