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sci-chemistry/pymol

A Python-extensible molecular graphics system

Screenshots

  • pymol-9999
    web python_targets_python2_7

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    Overlay: science (layman)
  • pymol-1.8.0
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    web python_targets_python2_7

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    Overlay: sabayon-tools (layman)
  • pymol-1.7.7.2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (layman)
  • pymol-1.7.6.0
    amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (layman)

ChangeLog

# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
# (auto-generated from git log)

*pymol-1.7.6.0 (09 Aug 2015)
*pymol-1.7.4.0 (09 Aug 2015)
*pymol-1.7.0.1 (09 Aug 2015)

09 Aug 2015; Robin H. Johnson <robbat2@gentoo.org>
+files/pymol-1.7.3.1-maeffplugin.cpp.patch, +metadata.xml,
+pymol-1.7.0.1.ebuild, +pymol-1.7.4.0.ebuild, +pymol-1.7.6.0.ebuild:
proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration
tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this
project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo
developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve
cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014
work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on
the bikeshed

24 Aug 2015; Justin Lecher <jlec@gentoo.org> metadata.xml,
pymol-1.7.0.1.ebuild, pymol-1.7.4.0.ebuild, pymol-1.7.6.0.ebuild:
Use https by default

Convert all URLs for sites supporting encrypted connections from http to
https

Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 Aug 2015; Mike Gilbert <floppym@gentoo.org> metadata.xml:
Revert DOCTYPE SYSTEM https changes in metadata.xml

repoman does not yet accept the https version.
This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450.

Bug: https://bugs.gentoo.org/552720

27 Aug 2015; Justin Lecher <jlec@gentoo.org> pymol-1.7.0.1.ebuild,
pymol-1.7.4.0.ebuild, pymol-1.7.6.0.ebuild:
React on subslot changes

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 Sep 2015; Agostino Sarubbo <ago@gentoo.org> pymol-1.7.4.0.ebuild:
amd64 stable wrt bug #543020

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"

01 Oct 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
Add missing remote-id type=sourceforge

Signed-off-by: Justin Lecher <jlec@gentoo.org>

10 Nov 2015; Justin Lecher <jlec@gentoo.org> pymol-1.7.0.1.ebuild,
pymol-1.7.4.0.ebuild, pymol-1.7.6.0.ebuild:
Sanitize virtual namespace of python packages

Rename virtual/MODULE to virtual/python-MODULE

Signed-off-by: Justin Lecher <jlec@gentoo.org>

11 Nov 2015; Agostino Sarubbo <ago@gentoo.org> pymol-1.7.4.0.ebuild:
x86 stable wrt bug #543020

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"

11 Nov 2015; Justin Lecher <jlec@gentoo.org> metadata.xml,
-pymol-1.7.0.1.ebuild:
Drop old

obsoletes

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=543018

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec@gentoo.org>

*pymol-1.7.7.2 (11 Nov 2015)

11 Nov 2015; Justin Lecher <jlec@gentoo.org> +pymol-1.7.7.2.ebuild:
Version Bump

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec@gentoo.org>

11 Nov 2015; Agostino Sarubbo <ago@gentoo.org> pymol-1.7.6.0.ebuild:
amd64 stable wrt bug #565494

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"

11 Nov 2015; Agostino Sarubbo <ago@gentoo.org> pymol-1.7.6.0.ebuild:
x86 stable wrt bug #565494

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"

12 Nov 2015; Justin Lecher <jlec@gentoo.org> metadata.xml,
-pymol-1.7.4.0.ebuild, pymol-1.7.6.0.ebuild, pymol-1.7.7.2.ebuild:
Always use included apbs plugin

Correctly block files collisions

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=565600

Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec@gentoo.org>

09 Jan 2016; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop myself as maintainer

Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 Jan 2016; Michał Górny <mgorny@gentoo.org> metadata.xml:
Replace all herds with appropriate projects (GLEP 67)

Replace all uses of herd with appropriate project maintainers, or no
maintainers in case of herds requested to be disbanded.

24 Jan 2016; Michał Górny <mgorny@gentoo.org> metadata.xml:
Set appropriate maintainer types in metadata.xml (GLEP 67)