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sci-chemistry/pymol

A Python-extensible molecular graphics system

Screenshots

  • pymol-9999
    apbs web python_targets_python2_7

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    Overlay: science (layman)
  • pymol-1.7.1.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.7.1.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.7.0.4-r1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.7.0.4-r1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.7.0.4
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.7.0.4
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.7.0.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.7.0.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.7.0.0
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.7.0.0
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.6.0.0-r2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.6.0.0-r2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.6.0.0-r1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.6.0.0-r1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.6.0.0
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.6.0.0
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.6.0_rc1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.6.0_rc1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.5.0.3-r2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs numpy vmd web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: gentoo (distro)
  • pymol-1.5.0.3-r2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs numpy vmd web python_targets_python2_7

    View      Download      Browse     License: PSF-2.2   
    Overlay: funtoo (distro)
  • pymol-1.5.0.3-r1
    amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs numpy vmd web

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    Overlay: gentoo (distro)
  • pymol-1.5.0.3-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

    View      Download      Browse     License: PSF-2.2   
    Overlay: sabayon-distro (layman)
  • pymol-1.5.0.3-r1
    amd64 ppc x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

    View      Download      Browse     License: PSF-2.2   
    Overlay: axs (layman)
  • pymol-1.5.0.3-r1
    amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
    apbs numpy vmd web

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    Overlay: funtoo (distro)
  • pymol-1.5.0.3
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

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    Overlay: axs (layman)
  • pymol-1.5.0.2
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

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    Overlay: axs (layman)
  • pymol-1.5.0.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

    View      Download      Browse     License: PSF-2.2   
    Overlay: axs (layman)
  • pymol-1.5.0.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

    View      Download      Browse     License: PSF-2.2   
    Overlay: sabayon-distro (layman)
  • pymol-1.4.1
    ~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
    apbs numpy vmd web

    View      Download      Browse     License: PSF-2.2   
    Overlay: axs (layman)
  • pymol-1.3.1_pre3925-r1
    amd64 ppc x86 ~amd64-linux ~x86-linux
    apbs numpy shaders vmd

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    Overlay: axs (layman)

ChangeLog

# ChangeLog for sci-chemistry/pymol
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.111 2014/04/08 16:11:32 jlec Exp $

*pymol-1.7.1.1 (08 Apr 2014)

08 Apr 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.1.1.ebuild:
Version Bump

*pymol-1.7.0.4-r1 (13 Mar 2014)

13 Mar 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.4-r1.ebuild,
+files/pymol-1.7.0.4-fix-broken-label-scaling-on-Linux.patch:
Backport fix for broken labels

*pymol-1.7.0.4 (10 Mar 2014)

10 Mar 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.4.ebuild:
Version Bump

26 Jan 2014; Justin Lecher <jlec@gentoo.org> ChangeLog:
Update HOMEPAGE

*pymol-1.7.0.1 (26 Jan 2014)

26 Jan 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.1.ebuild:
Version Bump

26 Jan 2014; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r1.ebuild,
pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild,
pymol-1.6.0.0-r1.ebuild, pymol-1.6.0.0-r2.ebuild, pymol-1.7.0.0.ebuild:
Update HOMEPAGE

15 Jan 2014; Justin Lecher <jlec@gentoo.org> pymol-1.7.0.0.ebuild:
Supress unnecessary argparse import

*pymol-1.7.0.0 (15 Jan 2014)

15 Jan 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.0.ebuild:
Version Bump

*pymol-1.6.0.0-r2 (16 Jul 2013)

16 Jul 2013; Justin Lecher <jlec@gentoo.org> +pymol-1.6.0.0-r2.ebuild,
+files/pymol-1.6.0.0-stereo.patch:
Backport fix for stereo flickering

*pymol-1.6.0.0-r1 (18 Jun 2013)

18 Jun 2013; Justin Lecher <jlec@gentoo.org> +pymol-1.6.0.0-r1.ebuild,
+files/pymol-1.6.0.0-bg_rgb.patch, +files/pymol-1.6.0.0-labels.patch:
Add backports of upstream bugfixes

*pymol-1.6.0.0 (12 Jun 2013)

12 Jun 2013; Justin Lecher <jlec@gentoo.org> +pymol-1.6.0.0.ebuild:
Version Bump

*pymol-1.6.0_rc1 (25 Mar 2013)

25 Mar 2013; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r2.ebuild,
+pymol-1.6.0_rc1.ebuild:
Version Bump

19 Mar 2013; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r2.ebuild:
Prefix love

*pymol-1.5.0.3-r2 (30 Jan 2013)

30 Jan 2013; Justin Lecher <jlec@gentoo.org> +pymol-1.5.0.3-r2.ebuild:
Move to new python eclasses, #453572

22 Jan 2013; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r1.ebuild,
metadata.xml:
Fix SLOT for pmw

15 Oct 2012; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r1.ebuild:
Add mime type definition

06 Oct 2012; Justin Lecher <jlec@gentoo.org>
-files/pymol-0.99_rc10-data-path.patch, -files/pymol-1.2.2-data-path.patch,
-files/pymol-1.2.2-prefix.patch, -files/pymol-1.2.2-shaders.patch,
-files/pymol-1.2.2-vmd.patch, -files/pymol-1.3.0-vmd.patch,
-pymol-1.3.1_pre3925-r1.ebuild, -pymol-1.4.1.ebuild,
-files/pymol-1.4.1-data-path.patch, -files/pymol-1.4.1-shaders.patch,
-files/pymol-1.4.1-web.patch, -files/pymol-1.4-shaders.patch,
-files/pymol-1.4-vmd.patch, -pymol-1.5.0.1.ebuild,
-files/pymol-1.5.0.1-prefix.patch, -pymol-1.5.0.2.ebuild,
-pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild, metadata.xml:
Add fix for OSX prefix and keyword ~x64-macos ~x86-macos; #437324; Drop old

23 Sep 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org> pymol-1.5.0.3-r1.ebuild:
x86 stable wrt bug #431120

14 Aug 2012; Anthony G. Basile <blueness@gentoo.org> pymol-1.5.0.3-r1.ebuild:
Stable ppc, bug #431120

14 Aug 2012; Agostino Sarubbo <ago@gentoo.org> pymol-1.5.0.3-r1.ebuild:
Stable for amd64, wrt bug #431120

14 Aug 2012; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.3-r1.ebuild:
Add aditional messages for crashing shader support

12 Aug 2012; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.1.ebuild,
pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild:
Correct Desktop entry

04 Jun 2012; Michael Weber <xmw@gentoo.org> pymol-1.3.1_pre3925-r1.ebuild:
ppc stable (bug 366229)

29 Mar 2012; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.1.ebuild,
pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild:
Add new icon files provided by Ramiro Téllez Sanz

*pymol-1.5.0.3-r1 (28 Mar 2012)

28 Mar 2012; Justin Lecher <jlec@gentoo.org>
files/pymol-1.5.0.1-data-path.patch, +pymol-1.5.0.3-r1.ebuild:
Add missing wrong usage of PYMOL_PATH, #409971

*pymol-1.5.0.3 (10 Mar 2012)

10 Mar 2012; Justin Lecher <jlec@gentoo.org> +pymol-1.5.0.3.ebuild,
+files/pymol-1.5.0.3-prefix.patch, +files/pymol-1.5.0.3-web.patch:
Version BUmp

*pymol-1.5.0.2 (27 Feb 2012)

27 Feb 2012; Justin Lecher <jlec@gentoo.org> pymol-1.5.0.1.ebuild,
+pymol-1.5.0.2.ebuild:
Version Bump

26 Feb 2012; Patrick Lauer <patrick@gentoo.org> pymol-1.3.1_pre3925-r1.ebuild,
pymol-1.4.1.ebuild, pymol-1.5.0.1.ebuild:
Restricting pypy and jython

14 Feb 2012; Justin Lecher <jlec@gentoo.org> -files/1.2.2-data-path.patch,
-files/1.2.1/pymol-1.2.1-data-path.patch, -files/1.2.2-prefix.patch,
-files/1.2.1/pymol-1.2.1-shaders.patch, -files/1.3.0-vmd.patch,
-pymol-1.2.3-r1.ebuild, -files/1.4.1-data-path.patch,
pymol-1.3.1_pre3925-r1.ebuild, -files/1.4.1-shaders.patch,
pymol-1.4.1.ebuild, -files/1.4-shaders.patch,
+files/pymol-1.2.2-data-path.patch, +files/pymol-1.4.1-data-path.patch,
-files/1.4-vmd.patch, +files/pymol-1.3.0-vmd.patch,
+files/pymol-1.4.1-shaders.patch, -files/1.4.1-web.patch,
+files/pymol-1.2.2-prefix.patch, +files/pymol-1.4.1-web.patch,
+files/pymol-1.4-shaders.patch, +files/pymol-1.4-vmd.patch,
pymol-1.5.0.1.ebuild, -files/pymol-1.5.0.1-nosplash.patch:
Rename all patches, add support for desktop icon, drop nosplash patch and add
launch option

*pymol-1.5.0.1 (13 Feb 2012)

13 Feb 2012; Justin Lecher <jlec@gentoo.org> +pymol-1.5.0.1.ebuild,
+files/pymol-1.5.0.1-data-path.patch, +files/pymol-1.5.0.1-flags.patch,
+files/pymol-1.5.0.1-nosplash.patch, +files/pymol-1.5.0.1-prefix.patch,
+files/pymol-1.5.0.1-setup.py.patch, +files/pymol-1.5.0.1-vmd.patch,
+files/pymol-1.5.0.1-web.patch, metadata.xml:
Version Bump

02 Jun 2011; Justin Lecher <jlec@gentoo.org> +files/1.4.1-web.patch,
pymol-1.4.1.ebuild, metadata.xml:
Fix collision with dev-python/webpy, #368947