gpo.zugaina.org

Search Portage & Overlays:

sci-biology/vcftools

Tools for working with VCF (Variant Call Format) files

Screenshots

  • vcftools-0.1.14
    ~amd64 ~x86
    lapack

    View      Download      Browse     License: LGPL-3   
    Overlay: gentoo (distro)

ChangeLog

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 58c2afe759963053ffd8e15b58f34376ea2f551f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 28 21:17:10 2017 +0200

sci-biology/vcftools: the 0.1.15_pre release was just renamed to 0.1.15 by upstream

Package-Manager: Portage-2.3.6, Repoman-2.3.3

commit 31b98237e748c44e1be5357849308fb8e3dfe2d2
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon May 22 07:21:37 2017 +0100

sci-biology/vcftools: QA Fixes

Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit d32ee40acbcb944ebc89a37b5935e84bbe2bf36b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Apr 19 11:16:35 2017 +0200

sci-biology/vcftools: add a pre-release version

Our build patch for 0.1.14 was accepted by upstream.

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit cec254823f198e90b0c51750704aab40e9e0c64c
Author: David Seifert <soap@gentoo.org>
Date: Sun Sep 25 11:44:52 2016 +0200

sci-biology/vcftools: remove, in main tree

commit 120da1074b01f60b3b7b98776c8cae7d38ac451e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Aug 26 18:20:38 2016 +0200

sci-biology/vcftool: version bump; adjust to new build system

Package-Manager: portage-2.3.0

commit fd1d97e00b077c5d4956efbf2951a0261b0ac674
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Jul 31 22:13:45 2016 +0200

sci-biology/vcftools: version bump

Package-Manager: portage-2.3.0

commit 4c08c4d51d42df4ccf28aeaa23324358cb0c007b
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Apr 16 08:28:32 2015 +0200

In CVS

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a94334503b1305007f699b8c586467390140cbf2
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Apr 15 11:37:16 2015 +0200

Drop CVS keywords

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f82e0c0852e65a16c66d0a42785bc8d4609d3a9c
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 19 11:35:43 2015 +0100

EAPI bump

Package-Manager: portage-2.2.15

commit 3db1af349c35a27a5f09fed54da8fd07b4d17664
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 19 11:35:14 2015 +0100

removing KEYWORDS until the perl files are installed to some other place. At the moment I get: 'perl-module.eclass: Suspicious environment values found. PERL5LIB="/usr/share/vcftools/perl"'

Package-Manager: portage-2.2.15

commit da8f88f098f729e3f1d41ce540743453d31ab6e1
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 11 20:35:54 2015 +0100

version bump; vcftools-0.1.8-buildsystem.patch does not apply to current tree so using sed calls from within ebuild to mimic the tweaks

Package-Manager: portage-2.2.15