sci-biology/pybedtools
Use BED and GFF files from python using BEDtools
ChangeLog
commit 7a7acdb52f5a587412f7f4f51529d6986e47fb9f
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:23:53 2023 +0200
sci-biology/pybedtools: disable py3.9
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 987fad3d4b257f83e58e20183e324b21e82f1584
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:23:37 2023 -0400
sci-biology/pybedtools: add 0.9.0
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 811db2634692304728d8e765f4a7b5ad5b54f89a
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:19:10 2023 -0400
sci-biology/pybedtools: distutils PEP 517
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 50d38d2e487a86cdb5348a6ac81f227ab4b4af12
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:16:54 2023 -0400
sci-biology/pybedtools: enable py3.11, py3.9, fixed tests
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 013a94d87d9a4ff23a9db6e4f02ae7d113580f2d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Jan 12 12:40:54 2023 +0100
*/*: drop py3.8 and py3.9 where py3.10+ already enabled
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit b8f4b9f92217f53077630ec58e4fe794669768a3
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 12:22:53 2022 +0100
sci-biology/pybedtools: bump to version 0.8.2
Closes: https://github.com/gentoo/sci/issues/983
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 45f4ecf6f9d5e9c4e699ea84a7b4b8bb6c9740d6
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Dec 31 11:34:09 2020 +0100
sci-biology/pybedtools: drop py3.6
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/1012
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
commit f1b4f4489e2e9181bca1dde19fffb24a9155bef7
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sat Dec 12 16:23:20 2020 +0100
sci-biology/pybedtools: document more dependencies
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 08cb203ae14acd64b0d0c5a7489d9fca813154de
Author: Horea Christian <chr@chymera.eu>
Date: Sun Sep 27 02:50:26 2020 -0400
sci-biology/pybedtools: PYTHON_COMPAT update and actually install files
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 3a0d3cb989aa14f980ad867cb8b7d7db5284789f
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 20:27:40 2020 +0200
sci-biology/pybedtools: hopefully install generated HTML files
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit e29df37c8b9b02f3749a57c2075bed05f0a71260
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 20:22:00 2020 +0200
sci-biology/pybedtools: respect minimal and doc USE flags
Installation of the to be generated doc pages is not tested
as I am blocked by bug #721306. Probably some dir needs to be
recursively installed.
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit ae5eb7ca6ede7e8579ade25afb8eb005c62ee35a
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 19:44:42 2020 +0200
sci-biology/pybedtools: update homepage, explicitly run cythonize
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit f54702e57e98ae5f4bf7f867f40dd3ea29157f19
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sun Dec 29 12:39:28 2019 +0100
sci-biology/pybedtools: upgrade from 0.6.9 to 0.8.0
0.6.9 was not fully python3 ready, due to
https://stackoverflow.com/questions/40367569/dictionary-not-writable-generic-old-setup-py
at least
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 302d36d9dd56ccda4ceaa0aa6b514609fe39ff6d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Jun 6 12:12:45 2015 +0200
sci-biology/pybedtools: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit 4d506095aa0fa6c96e45346b80f92c34d776afc7
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Apr 13 08:20:33 2015 +0200
sci-biology/pybedtools: Streamline ebuild
Package-Manager: portage-2.2.18
commit 9fad98b6c4ccb13e73afb6d5b6e55854698a252d
Author: layman <layman@localhost>
Date: Sun Apr 12 17:07:42 2015 +0100
sci-biology/pybedtools: add pybedtools
Package-Manager: portage-2.2.14-prefix
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:23:53 2023 +0200
sci-biology/pybedtools: disable py3.9
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 987fad3d4b257f83e58e20183e324b21e82f1584
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:23:37 2023 -0400
sci-biology/pybedtools: add 0.9.0
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 811db2634692304728d8e765f4a7b5ad5b54f89a
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:19:10 2023 -0400
sci-biology/pybedtools: distutils PEP 517
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 50d38d2e487a86cdb5348a6ac81f227ab4b4af12
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 00:16:54 2023 -0400
sci-biology/pybedtools: enable py3.11, py3.9, fixed tests
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 013a94d87d9a4ff23a9db6e4f02ae7d113580f2d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Jan 12 12:40:54 2023 +0100
*/*: drop py3.8 and py3.9 where py3.10+ already enabled
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit b8f4b9f92217f53077630ec58e4fe794669768a3
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 12:22:53 2022 +0100
sci-biology/pybedtools: bump to version 0.8.2
Closes: https://github.com/gentoo/sci/issues/983
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 45f4ecf6f9d5e9c4e699ea84a7b4b8bb6c9740d6
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Dec 31 11:34:09 2020 +0100
sci-biology/pybedtools: drop py3.6
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/1012
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
commit f1b4f4489e2e9181bca1dde19fffb24a9155bef7
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sat Dec 12 16:23:20 2020 +0100
sci-biology/pybedtools: document more dependencies
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 08cb203ae14acd64b0d0c5a7489d9fca813154de
Author: Horea Christian <chr@chymera.eu>
Date: Sun Sep 27 02:50:26 2020 -0400
sci-biology/pybedtools: PYTHON_COMPAT update and actually install files
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 3a0d3cb989aa14f980ad867cb8b7d7db5284789f
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 20:27:40 2020 +0200
sci-biology/pybedtools: hopefully install generated HTML files
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit e29df37c8b9b02f3749a57c2075bed05f0a71260
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 20:22:00 2020 +0200
sci-biology/pybedtools: respect minimal and doc USE flags
Installation of the to be generated doc pages is not tested
as I am blocked by bug #721306. Probably some dir needs to be
recursively installed.
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit ae5eb7ca6ede7e8579ade25afb8eb005c62ee35a
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Wed May 6 19:44:42 2020 +0200
sci-biology/pybedtools: update homepage, explicitly run cythonize
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit f54702e57e98ae5f4bf7f867f40dd3ea29157f19
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sun Dec 29 12:39:28 2019 +0100
sci-biology/pybedtools: upgrade from 0.6.9 to 0.8.0
0.6.9 was not fully python3 ready, due to
https://stackoverflow.com/questions/40367569/dictionary-not-writable-generic-old-setup-py
at least
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 302d36d9dd56ccda4ceaa0aa6b514609fe39ff6d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Jun 6 12:12:45 2015 +0200
sci-biology/pybedtools: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit 4d506095aa0fa6c96e45346b80f92c34d776afc7
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Apr 13 08:20:33 2015 +0200
sci-biology/pybedtools: Streamline ebuild
Package-Manager: portage-2.2.18
commit 9fad98b6c4ccb13e73afb6d5b6e55854698a252d
Author: layman <layman@localhost>
Date: Sun Apr 12 17:07:42 2015 +0100
sci-biology/pybedtools: add pybedtools
Package-Manager: portage-2.2.14-prefix