sci-biology/jellyfish
k-mer counter within reads for assemblies
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commit f8c26f3c6899cc2c9de3d1d422f3fd2032c899aa
Author: Horea Christian <chr@chymera.eu>
Date: Thu Apr 20 00:11:31 2023 -0400
sci-biology/jellyfish: update EAPI 7 -> 8
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 1824864d7672cec024e6a09bbd68abfb005f200d
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:27:41 2023 -0400
sci-biology/jellyfish: add github upstream metadata
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 119665a77ed75950a41f19c1b4ea83ea9030569c
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:26:31 2023 -0400
sci-biology/jellyfish: update HOMEPAGE
Signed-off-by: Horea Christian <chr@chymera.eu>
commit f4a2efc5cc14bdcde3643e259fc069af29818570
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Jan 14 11:06:05 2022 +0100
sci-biology/jellyfish: fix configure phase, add missing deps
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 17e308e073ef280d8f7a56db3ce1fb7177146ab3
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:27:23 2021 +0100
sci-biology/jellyfish: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 53e334d850765ddcf72f8a7316b93c337bcaee45
Author: Jakov Smolic <jakov.smolic@sartura.hr>
Date: Sun Jun 6 01:31:52 2021 +0100
sci-biology/jellyfish: Call econf in src_configure in 1.1.12
Closes: https://bugs.gentoo.org/755752
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr>
commit 0ab5b07fa7e7699f34c1c2463d1607156b354487
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 12:33:59 2021 +0100
sci-biology/jellyfish: cleanup old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit c85df1ad01fd17212b53c14fda2a36b760f95769
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 12:33:39 2021 +0100
sci-biology/jellyfish: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 2f881f69025009f2326c2f371afc3d0520af4706
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Aug 17 13:21:31 2020 +0200
sci-biology/jellyfish: upstream silently re-released 2.3.0
https://github.com/gmarcais/Jellyfish/issues/153#issuecomment-674821820
Package-Manager: Portage-3.0.3, Repoman-3.0.0
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit f2cc575327492f00406b60897b58a6103fc9a6a9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Oct 1 20:18:44 2019 +0200
sci-biology/jellyfish: update checksums for 2.3.0
Upstream silently re-released 2.3.0 tarballs, seems the
changes were in Makefile templates, introduced testsuite,
swig support (see Makefile.am for --enable-swig) .
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 149f20f4275c9b8530d623935f370a2edd84af8d
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 18 18:10:11 2019 +0200
sci-biology/jellyfish: version bump
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3018cbc70e35cdf24bb18df11e7d59141f65437c
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Sep 11 13:21:38 2018 +0200
sci-biology/jellyfish: remove doubled econf call
Package-Manager: Portage-2.3.48, Repoman-2.3.10
commit 39d413c0adc6a8d96442cc9562c516c53021add8
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Wed May 2 00:13:29 2018 +0200
sci-biology/jellyfish: version bump and a few tweaks
Install properly PDF documentation.
Use $ in SRC_URI.
Update SRC_URI to reflect github hosting these days.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
commit 026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 23 21:13:21 2018 +0200
sci-biology/jellyfish: install bundled PDF manual
And do not download an old version at all.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
commit 0b235984987db697c4d43270887884e66cf894a3
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 21 21:43:04 2018 +0200
sci-biology/jellyfish: install the pdf manual too
Package-Manager: Portage-2.3.28, Repoman-2.3.9
commit 2778b51209c924509c1dfcdf68d505b78f7654a1
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 21 21:07:06 2018 +0200
sci-biology/jellyfish: SLOT jellyfish to support concurrent ver.
This renames the resulting binaries, pkg-config file contents, headers, and all
packages currently depending on sci-biology/jellyfish.
sci-biology/quorum: SLOT jellyfish to support concurrent ver.
sci-biology/Rcorrector: SLOT jellyfish to support concurrent ver.
sci-biology/SEECER: SLOT jellyfish to support concurrent ver.
sci-biology/amos: SLOT jellyfish to support concurrent ver.
sci-biology/kraken: SLOT jellyfish to support concurrent ver.
sci-biology/wgs-assembler: SLOT jellyfish to support concurrent ver.
Package-Manager: Portage-2.3.28, Repoman-2.3.9
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 03271b4b44f838754e7af1b70c62366c42f4d4d2
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Nov 21 17:08:54 2017 +0100
sci-biology/jellyfish: rename jellyfish to jellyfish1
This will facilitate simultaneous installs of jeelyfish2
and jellyfish, so that sci-biology/SEECER and sci-biology/quorum
could be installed at the same time (both calling "jellyfish"
but quorum needs version 2 and SEECER version 1.
See list of files at https://packages.debian.org/unstable/jellyfish1
Package-Manager: Portage-2.3.14, Repoman-2.3.6
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bcdbe7d68fad5b1056f370020f236e543952ee4f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 17:56:39 2017 +0200
sci-biology/jellyfish: point SRC_URI to proper tarball, drop yaggo DEPENDency
This tarball really doe snot need yaggo for building. See
for whole discussion: https://github.com/gmarcais/Jellyfish/issues/87
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit dccca8150240011802245e34055dc76a5dfdabbd
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 16:21:04 2017 +0200
sci-biology/jellyfish: CDEPEND does not work?
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit 89745927430667600a2190593e887ccf4eac14e5
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 16:17:46 2017 +0200
sci-biology/jellyfish: version bump, add new CDEPEND on dev-lang/yaggo
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a5b2a38c915c223d7c2712301c6802b3e6c3389f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 9 17:23:50 2016 +0100
sci-biology/jellyfish: version bump; respect sse CPU USE flag
Package-Manager: portage-2.3.3
commit c5a275736294026002e61d4d3582c1c8e3e8ca51
Author: mschubert <mschu.dev@gmail.com>
Date: Sat Jan 23 19:31:54 2016 +0000
sci-biology/jellyfish: bump EAPI=6 and QA
* respect $, fix pkg-config paths
* add missing die
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e563ef0844dacf85a0dffc25c134f108465c7255
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Nov 13 20:10:20 2015 +0100
sci-biology/jellyfish: fix filename generated by pkgconfig
Package-Manager: portage-2.2.18
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit fa9b7040b13664449a9b5258bc99c7a7431bba5a
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon May 4 16:45:15 2015 +0200
sci-biology/jellyfish: Correct license from HalfLICENSE to BSD as they are identical
Package-Manager: portage-2.2.18
commit 807e154c5033cdff04e4f1db51cb7e15b1b8fe75
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 00:01:38 2015 +0200
sci-biology/jellyfish: added a note
Package-Manager: portage-2.2.18
commit 22c41949bd2a07f4d261391d89b9a527952d221f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 23:29:18 2015 +0200
sci-biology/jellyfish: fixed homepage for the old version
Package-Manager: portage-2.2.18
commit d5bb19eb26c17d1639a37265acd3ea31d65a79b3
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 23:27:46 2015 +0200
sci-biology/jellyfish: added older version, added HalfLICENSE to all ebuilds
Package-Manager: portage-2.2.18
commit 2084f45bf4de01d7c6c603fb294b54b35386e97b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 22:32:21 2015 +0200
sci-biology/jellyfish: added missing DEPEND on virtual/pkgconfig so that the jellyfish-2.0.pc gets installed properly
Package-Manager: portage-2.2.18
commit 50d3d1d5b5c59652a2348b4105490cc698125b89
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 12:10:36 2015 +0200
sci-biology/jellyfish: version bump; ebuild cleanup
Package-Manager: portage-2.2.18
commit 3b210b2d6e82815216cd3c46bdec443ddbd49018
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Apr 1 00:33:51 2015 +0200
sci-biology/jellyfish: fix /usr/lib64/pkgconfig/jellyfish-2.0.pc
Package-Manager: portage-2.2.18
commit ca1d210fcb7805b9b0facbf1e6896d84e123f4cc
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 31 21:50:20 2015 +0200
sci-biology/jellyfish: fix installation of header *.hpp files into /usr/include/jellyfish-2.1.3/jellyfish/ broken somewhere in upstream's code
Package-Manager: portage-2.2.18
commit a02cb28232bd985520b07b000bd19ae6bc8fb025
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jan 7 22:42:09 2015 +0100
added a comment on old version
Package-Manager: portage-2.2.7
commit 67b7a57059dc518a94c8c2af71a2ef0317b2cded
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 3 01:13:20 2014 +0200
sci-biology/jellyfish: new package, works
Package-Manager: portage-2.2.7
Author: Horea Christian <chr@chymera.eu>
Date: Thu Apr 20 00:11:31 2023 -0400
sci-biology/jellyfish: update EAPI 7 -> 8
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 1824864d7672cec024e6a09bbd68abfb005f200d
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:27:41 2023 -0400
sci-biology/jellyfish: add github upstream metadata
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 119665a77ed75950a41f19c1b4ea83ea9030569c
Author: Horea Christian <chr@chymera.eu>
Date: Wed Apr 19 23:26:31 2023 -0400
sci-biology/jellyfish: update HOMEPAGE
Signed-off-by: Horea Christian <chr@chymera.eu>
commit f4a2efc5cc14bdcde3643e259fc069af29818570
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Jan 14 11:06:05 2022 +0100
sci-biology/jellyfish: fix configure phase, add missing deps
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 17e308e073ef280d8f7a56db3ce1fb7177146ab3
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:27:23 2021 +0100
sci-biology/jellyfish: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 53e334d850765ddcf72f8a7316b93c337bcaee45
Author: Jakov Smolic <jakov.smolic@sartura.hr>
Date: Sun Jun 6 01:31:52 2021 +0100
sci-biology/jellyfish: Call econf in src_configure in 1.1.12
Closes: https://bugs.gentoo.org/755752
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr>
commit 0ab5b07fa7e7699f34c1c2463d1607156b354487
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 12:33:59 2021 +0100
sci-biology/jellyfish: cleanup old
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit c85df1ad01fd17212b53c14fda2a36b760f95769
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 12:33:39 2021 +0100
sci-biology/jellyfish: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 2f881f69025009f2326c2f371afc3d0520af4706
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Aug 17 13:21:31 2020 +0200
sci-biology/jellyfish: upstream silently re-released 2.3.0
https://github.com/gmarcais/Jellyfish/issues/153#issuecomment-674821820
Package-Manager: Portage-3.0.3, Repoman-3.0.0
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit f2cc575327492f00406b60897b58a6103fc9a6a9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Oct 1 20:18:44 2019 +0200
sci-biology/jellyfish: update checksums for 2.3.0
Upstream silently re-released 2.3.0 tarballs, seems the
changes were in Makefile templates, introduced testsuite,
swig support (see Makefile.am for --enable-swig) .
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 149f20f4275c9b8530d623935f370a2edd84af8d
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 18 18:10:11 2019 +0200
sci-biology/jellyfish: version bump
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3018cbc70e35cdf24bb18df11e7d59141f65437c
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Sep 11 13:21:38 2018 +0200
sci-biology/jellyfish: remove doubled econf call
Package-Manager: Portage-2.3.48, Repoman-2.3.10
commit 39d413c0adc6a8d96442cc9562c516c53021add8
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Wed May 2 00:13:29 2018 +0200
sci-biology/jellyfish: version bump and a few tweaks
Install properly PDF documentation.
Use $ in SRC_URI.
Update SRC_URI to reflect github hosting these days.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
commit 026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 23 21:13:21 2018 +0200
sci-biology/jellyfish: install bundled PDF manual
And do not download an old version at all.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
commit 0b235984987db697c4d43270887884e66cf894a3
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 21 21:43:04 2018 +0200
sci-biology/jellyfish: install the pdf manual too
Package-Manager: Portage-2.3.28, Repoman-2.3.9
commit 2778b51209c924509c1dfcdf68d505b78f7654a1
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 21 21:07:06 2018 +0200
sci-biology/jellyfish: SLOT jellyfish to support concurrent ver.
This renames the resulting binaries, pkg-config file contents, headers, and all
packages currently depending on sci-biology/jellyfish.
sci-biology/quorum: SLOT jellyfish to support concurrent ver.
sci-biology/Rcorrector: SLOT jellyfish to support concurrent ver.
sci-biology/SEECER: SLOT jellyfish to support concurrent ver.
sci-biology/amos: SLOT jellyfish to support concurrent ver.
sci-biology/kraken: SLOT jellyfish to support concurrent ver.
sci-biology/wgs-assembler: SLOT jellyfish to support concurrent ver.
Package-Manager: Portage-2.3.28, Repoman-2.3.9
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 03271b4b44f838754e7af1b70c62366c42f4d4d2
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Nov 21 17:08:54 2017 +0100
sci-biology/jellyfish: rename jellyfish to jellyfish1
This will facilitate simultaneous installs of jeelyfish2
and jellyfish, so that sci-biology/SEECER and sci-biology/quorum
could be installed at the same time (both calling "jellyfish"
but quorum needs version 2 and SEECER version 1.
See list of files at https://packages.debian.org/unstable/jellyfish1
Package-Manager: Portage-2.3.14, Repoman-2.3.6
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bcdbe7d68fad5b1056f370020f236e543952ee4f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 17:56:39 2017 +0200
sci-biology/jellyfish: point SRC_URI to proper tarball, drop yaggo DEPENDency
This tarball really doe snot need yaggo for building. See
for whole discussion: https://github.com/gmarcais/Jellyfish/issues/87
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit dccca8150240011802245e34055dc76a5dfdabbd
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 16:21:04 2017 +0200
sci-biology/jellyfish: CDEPEND does not work?
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit 89745927430667600a2190593e887ccf4eac14e5
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon May 15 16:17:46 2017 +0200
sci-biology/jellyfish: version bump, add new CDEPEND on dev-lang/yaggo
Package-Manager: Portage-2.3.5, Repoman-2.3.2
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a5b2a38c915c223d7c2712301c6802b3e6c3389f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 9 17:23:50 2016 +0100
sci-biology/jellyfish: version bump; respect sse CPU USE flag
Package-Manager: portage-2.3.3
commit c5a275736294026002e61d4d3582c1c8e3e8ca51
Author: mschubert <mschu.dev@gmail.com>
Date: Sat Jan 23 19:31:54 2016 +0000
sci-biology/jellyfish: bump EAPI=6 and QA
* respect $, fix pkg-config paths
* add missing die
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e563ef0844dacf85a0dffc25c134f108465c7255
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Nov 13 20:10:20 2015 +0100
sci-biology/jellyfish: fix filename generated by pkgconfig
Package-Manager: portage-2.2.18
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit fa9b7040b13664449a9b5258bc99c7a7431bba5a
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon May 4 16:45:15 2015 +0200
sci-biology/jellyfish: Correct license from HalfLICENSE to BSD as they are identical
Package-Manager: portage-2.2.18
commit 807e154c5033cdff04e4f1db51cb7e15b1b8fe75
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 00:01:38 2015 +0200
sci-biology/jellyfish: added a note
Package-Manager: portage-2.2.18
commit 22c41949bd2a07f4d261391d89b9a527952d221f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 23:29:18 2015 +0200
sci-biology/jellyfish: fixed homepage for the old version
Package-Manager: portage-2.2.18
commit d5bb19eb26c17d1639a37265acd3ea31d65a79b3
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 23:27:46 2015 +0200
sci-biology/jellyfish: added older version, added HalfLICENSE to all ebuilds
Package-Manager: portage-2.2.18
commit 2084f45bf4de01d7c6c603fb294b54b35386e97b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 22:32:21 2015 +0200
sci-biology/jellyfish: added missing DEPEND on virtual/pkgconfig so that the jellyfish-2.0.pc gets installed properly
Package-Manager: portage-2.2.18
commit 50d3d1d5b5c59652a2348b4105490cc698125b89
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 12:10:36 2015 +0200
sci-biology/jellyfish: version bump; ebuild cleanup
Package-Manager: portage-2.2.18
commit 3b210b2d6e82815216cd3c46bdec443ddbd49018
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Apr 1 00:33:51 2015 +0200
sci-biology/jellyfish: fix /usr/lib64/pkgconfig/jellyfish-2.0.pc
Package-Manager: portage-2.2.18
commit ca1d210fcb7805b9b0facbf1e6896d84e123f4cc
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 31 21:50:20 2015 +0200
sci-biology/jellyfish: fix installation of header *.hpp files into /usr/include/jellyfish-2.1.3/jellyfish/ broken somewhere in upstream's code
Package-Manager: portage-2.2.18
commit a02cb28232bd985520b07b000bd19ae6bc8fb025
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jan 7 22:42:09 2015 +0100
added a comment on old version
Package-Manager: portage-2.2.7
commit 67b7a57059dc518a94c8c2af71a2ef0317b2cded
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 3 01:13:20 2014 +0200
sci-biology/jellyfish: new package, works
Package-Manager: portage-2.2.7