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sci-biology/gffutils

GFF and GTF file manipulation and interconversion

Screenshots

  • gffutils-0.11.1
    ~amd64 ~x86
    test python_targets_python3_10 python_targets_python3_11

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ChangeLog

commit ebd8a0ddb0f27499a56e6b6fc63115950453e158
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:25:29 2023 +0200

sci-biology/gffutils: add missing RESTRICT="!test? ( test )"

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 2063f30830d744d566cddc2c454ec70e5600dae7
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:25:02 2023 +0200

sci-biology/gffutils: drop 0.10.1

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 6ce2af61c38f3532fc372f64ffa2a63939bab309
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 2 14:24:42 2023 +0200

sci-biology/gffutils: disable py3.9

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 5aebdd92b5637fad779aeaa19ca9045338ba126e
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 01:16:40 2023 -0400

sci-biology/gffutils: drop 0.8.7.1

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 2db7a214c3b7d8da2111658975f134527c6b84c4
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 01:16:31 2023 -0400

sci-biology/gffutils: add 0.11.1

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 58c91a2f36087e3dcc9495d1846218a9c3e27561
Author: Horea Christian <chr@chymera.eu>
Date: Sat Mar 25 01:10:13 2023 -0400

sci-biology/gffutils: update EAPI 7 -> 8

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 7987da509f38db2760af8b6f53306d37165ce6c4
Author: Horea Christian <chr@chymera.eu>
Date: Fri Mar 24 23:10:53 2023 -0400

sci-biology/gffutils: update HOMEPAGE

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 8e819929a999cf108b584da4d77b8d834b00fefb
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Wed Dec 30 19:20:12 2020 +0100

sci-biology/gffutils: drop py3.6

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/1008
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 6fdee212269c999a4ec6ceb020115f6b9959d20f
Author: Horea Christian <chr@chymera.eu>
Date: Sun Sep 27 03:33:55 2020 -0400

sci-biology/gffutils: version bump 0.10.1, test and PYTHON_COMPAT fix

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 24eca4914c2cb8f6a81cc5cb886ac227d44236e3
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 16 10:06:22 2017 +0100

sci-biology/gffutils: add missing DEPEND on dev-python/argcomplete

Package-Manager: Portage-2.3.13, Repoman-2.3.3

commit 2f30c658a273d1e82c103173a208a89e4bf23086
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 16 10:04:07 2017 +0100

sci-biology/gffutils: add missing DEPEND on dev-python/argh

Package-Manager: Portage-2.3.13, Repoman-2.3.3

commit 2254303b958dbae3a97c00e233fcf5ce6677d070
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 16 09:24:09 2017 +0100

sci-biology/gffutils: add missing DEPEND on dev-python/simplejson

Package-Manager: Portage-2.3.13, Repoman-2.3.3

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 03891018f1ec83244249614d4c269c22a346bfc3
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 20 18:55:09 2017 +0200

sci-biology/gffutils: version bump

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 01b55b7d8ba8dfb626ad37bd1db3c7f5d2b678d3
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Jun 6 12:11:09 2015 +0200

sci-biology/gffutils: Add github to remote-id in metadata.xml

Package-Manager: portage-2.2.20

commit 43eb6a19c10da1e241a39b02e05761cc1db3c6d3
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Apr 15 11:53:35 2015 +0200

Add digest

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 5ce25231a00388d2eb6c1f717fa1ec00e6cea813
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Apr 13 08:15:38 2015 +0200

sci-biology/gffutils: Streamline ebuild

Package-Manager: portage-2.2.18
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit d30355d1fca263599755a7e077de5d57978dfcb5
Author: layman <layman@localhost>
Date: Sun Apr 12 17:03:39 2015 +0100

sci-biology/gffutils: add gffutils

Package-Manager: portage-2.2.14-prefix