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sci-biology/fsl

Analysis of functional, structural, and diffusion MRI brain imaging data

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ChangeLog

commit a28423309bc3562113676a5009af778a18447267
Author: Horea Christian <chr@chymera.eu>
Date: Thu Feb 29 16:10:29 2024 -0500

sci-biology/fsl: updated C++ version

Signed-off-by: Horea Christian <chr@chymera.eu>

commit e70a178d1f25d4a537db84f43c78e03ca855ed21
Author: Michael Mair-Keimberger <mmk@levelnine.at>
Date: Sat Dec 30 18:52:36 2023 +0100

sci-biology/fsl: remove unused patches

Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit a533606704b86ace1e75de7786c3ca962e9687e5
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Mon May 2 14:16:46 2022 +0200

sci-biology/fsl: drop dep on cuda-10

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 3e155035c382ba0c3e76d69636ac6eff56d2bc35
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 16:33:21 2022 +0100

sci-biology/fsl: drop unused patches

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 9a7852ed945ad222d4969f29460c12a230ec8c1e
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 16:59:34 2022 +0100

sci-biology/fsl: drop old

Closes: https://github.com/gentoo/sci/issues/974
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit ea391932cb773a0305bcb60273dca6b59dfc331f
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Jan 14 21:36:21 2022 +0100

sci-biology/fsl: add version 6.0.5

No keywords, compile fails, need patches

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 2f56e2f209f2fbeea9f33212fd19a8e3a16fc49e
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:25:57 2021 +0100

sci-biology/fsl: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 1c4f022505e83357adc3fbab929ea55396aee27d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sun Jul 18 12:47:25 2021 +0200

sci-biology/fsl: add version 6.0.4

Closes: https://github.com/gentoo/sci/pull/1074
Co-authored-by: Paul Polak <paul.polak@med-image.info>
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 755c8ee10ebd59213df38f1366b36def28320c99
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jun 1 11:22:58 2021 +0200

sci-biology/fsl: fix dependency.missingslot

Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 3ef3c15bafb5079dd2018f02ea63c50a36e51002
Author: Aisha Tammy <gentoo@aisha.cc>
Date: Thu Dec 31 15:07:13 2020 +0000

sci-biology/fsl: break large patch into two

this should fix up the build

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 3e76637df474b35297300498482d198b0ef70de8
Author: Horea Christian <chr@chymera.eu>
Date: Fri Dec 18 03:15:30 2020 -0500

Updated developer email address.

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 6922e6ca034d8d4cd13f5101825de6ec930fb276
Author: Horea Christian <chr@chymera.eu>
Date: Tue Oct 20 12:23:22 2020 -0400

Updated developer email address.

Signed-off-by: Horea Christian <chr@chymera.eu>

commit 21789df887204e7b98393fb115982ee36a71d8c1
Author: AbstractMethod <paul.polak@med-image.info>
Date: Mon Sep 14 19:55:04 2020 -0400

Changes for fsl CUDA support

Package-Manager: Portage-3.0.6, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 81a494f099f8cbc900bc38808c6115bfd5345127
Author: Horea Christian <chr@chymera.eu>
Date: Sun Aug 9 00:49:47 2020 -0400

sci-biology/fsl: fixed compilation bug

as per: https://github.com/gentoo/sci/issues/963

Package-Manager: Portage-3.0.0, Repoman-2.3.23
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 1fd30cbfb13b50d1d93269344921505777809459
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jun 19 01:36:54 2020 -0400

sci-biology/fsl: dropped deprecated versions

no longer compatible with current GCC and fslpy unbundling

Package-Manager: Portage-2.3.101, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>

commit bb46a3101c02d7fa039c78fa666d4d35d5e32989
Author: Horea Christian <chr@chymera.eu>
Date: Fri Jun 19 01:30:09 2020 -0400

sci-biology/fsl: gcc compatibility

Package-Manager: Portage-2.3.101, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>

commit f672571c8517da492b59e914aaa25e8786a6af61
Author: Horea Christian <chr@chymera.eu>
Date: Thu Jan 30 16:22:28 2020 +0100

sci-biology/fsl: version bump 6.0.2

Thanks to François Bissey <frp.bissey@gmail.com>

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr@chymera.eu>

commit c7f45b539af87c6ba4fe535181d5d4afa25baa66
Author: François Bissey <frp.bissey@gmail.com>
Date: Sun Oct 21 14:04:05 2018 +1300

sci-biology/fsl: upstream bump

Package-Manager: Portage-2.3.49, Repoman-2.3.11
Signed-off-by: Horea Christian <horea.christ@yandex.com>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f22242259497a007fc4b36db8b2201cd72ab8d8b
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 18:55:26 2017 +0000

sci-biology/fsl: Fix repoman warnings

Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6

commit 0d75b7b6bc3b549e4d3fbe95c65ebce4ef1d92cc
Author: Horea Christian <horea.christ@yandex.com>
Date: Tue Aug 8 15:37:56 2017 +0200

sci-biology/fsl: version bump.

made env.dfile prefix-compatible

Closes: https://github.com/gentoo/sci/pull/804
Package-Manager: Portage-2.3.8, Repoman-2.3.3

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit eda8f3c599b7c146c971ba0295235a99604062b8
Author: Horea Christian <horea.christ@yandex.com>
Date: Wed Jan 4 12:13:11 2017 +0100

sci-biology/fsl: fixed outstanding FSLDIR and GUI issues (#716)

* sci-biology/fsl: addressing FSLDIR via symlinks

* sci-biology/fsl: fixed FSL GUI

Package-Manager: Portage-2.3.3, Repoman-2.3.1

* sci-biology/fsl: EAPI update

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit f20b269ef04b89aa34a817da04a2463351ab6567
Author: Horea Christian <horea.christ@yandex.com>
Date: Mon Apr 4 18:24:50 2016 +0200

cluster to fsl_cluster rename

* sci-biology/fsl: trying to resolve namespace conflict with graphviz

Package-Manager: portage-2.2.28

* sci-biology/fsl: corrected fix for naming collision

Package-Manager: portage-2.2.28

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6d2fe5739e0bf0478db40c4429215e78110b3326
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Nov 21 03:51:11 2015 +0100

typo

commit 062ff55d99a5f7c8e232aa453b49984917998ecc
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Nov 14 04:13:00 2015 +0100

sci-biology/fsl: added info about updating environment

Package-Manager: portage-2.2.23

commit da112361823dcd1856a50268b4fe4954c279aada
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Nov 4 22:55:34 2015 +0100

sci-biology/fsl: new sources location (upstream removes old sources)

Package-Manager: portage-2.2.23

commit 65da06ae6c6b80c958e4179df93c350c279968cc
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Sep 21 19:21:47 2015 +0200

sci-biology/fsl: Add subslot operators

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 35a5730109336111b4fafe8e7606cef0f9006f6b
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Fri May 29 09:58:54 2015 +0200

Correct ChangeLogs

commit c936a53ac9ac5f4e923326f9dfbfac3739b2dde2
Author: Horea Christian <h.chr@mail.ru>
Date: Thu Apr 9 04:07:29 2015 +0200

removed 5.0.4 redux patch

Package-Manager: portage-2.2.18

commit 17d1701d267f7c6beb268b4dd661f042ec4b4f0b
Author: Horea Christian <h.chr@mail.ru>
Date: Tue Apr 7 13:09:05 2015 +0200

removed ebuilds with unavailable sources

Package-Manager: portage-2.2.18

commit 79f0c9f5b19678ffa18b0ca2e9fb393a5e1b7ae8
Author: Horea Christian <h.chr@mail.ru>
Date: Tue Apr 7 13:08:26 2015 +0200

added new gentoo fsl-5.0.6 source location

Package-Manager: portage-2.2.18

commit 76a864a1f60bcf110e205e279086ab0c4ddd32c1
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Mar 30 18:16:51 2015 +0200

implemented 5.0.8 fsldir redux patch

Package-Manager: portage-2.2.18

commit 5d5c08d1c7bca1b5ae4278cac0b9d5536b345ccb
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Mar 30 18:14:41 2015 +0200

5.0.8 redux patch by François Bissey

Package-Manager: portage-2.2.18

commit fdcd3e55349c5c26f32f911ec8b7d950386f3660
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Mar 30 01:53:26 2015 +0200

using the 5.0.8 headers patch

Package-Manager: portage-2.2.18

commit bc9caf8627d0ae109d4d294f9b20ca1affd15c45
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Mar 30 01:52:57 2015 +0200

reimplmented pathc fsl-5.0.4-headers

Package-Manager: portage-2.2.18

commit 894067c2f8dd681a3a1a7219ee90f70cdf4e0f33
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Mar 28 22:31:00 2015 +0100

ported changes from 5.0.6 regarding FSLDIR

Package-Manager: portage-2.2.18

commit c9252c4925cba26273c9aa67193d9dc1ffad7806
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Mar 28 22:07:35 2015 +0100

hunk implemented by upstream

Package-Manager: portage-2.2.18

commit e4ec84ddd3e8f02d3d5c5824e7708de25147cc6c
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Mar 28 19:01:48 2015 +0100

corrected the changelog

Package-Manager: portage-2.2.18

commit fae6537014d7c03aeefc9c7d7c3ca23e841130e8
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Mar 28 18:56:30 2015 +0100

using new setup patch file for new ebuild

Package-Manager: portage-2.2.18

commit 98eb215e0d2c9c3e42a9aac7e39a0f5d983f0cde
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Mar 28 18:55:57 2015 +0100

new pathc by François Bissey

Package-Manager: portage-2.2.18

commit 33466f24f8ed105f0fd89626bff2604db2639a78
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 25 13:51:09 2015 +0100

added licences to all versions

Package-Manager: portage-2.2.18

commit 68fe87b054ec542364e640086872e5e4b31f86b9
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 25 11:53:29 2015 +0100

added license for included gdchart

Package-Manager: portage-2.2.18

commit 787b1ce2e28f44f17757f39e028442b37af1e0fa
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 25 11:06:31 2015 +0100

set the correct licences

Package-Manager: portage-2.2.18

commit f2b9e88047ac0f76bcdbf050d61685a2519b0426
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 11 20:48:59 2015 +0100

installing fslversion

Package-Manager: portage-2.2.18

commit 0a6acd8e277e8b1bb63af24829e76852f2182056
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 11 18:21:02 2015 +0100

sed-ing before installing

Package-Manager: portage-2.2.18

commit 3956c9c9482c4360acb377884903f0b09c7cd0a6
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 11 00:19:18 2015 +0100

changed grep wrapper

Package-Manager: portage-2.2.18

commit 4e242526131439aa84b88b301a16ea64479a9038
Author: Horea Christian <h.chr@mail.ru>
Date: Tue Mar 10 13:10:36 2015 +0100

reformatted tcl sed calls

Package-Manager: portage-2.2.18

commit fd6c1087b199b9cd35e86ee8fb861ec1e6312f6e
Author: Horea Christian <h.chr@mail.ru>
Date: Tue Mar 10 11:48:10 2015 +0100

fixed tcl location according to instructions by kiwifb

Package-Manager: portage-2.2.18

commit 24370907c9b2211dbfcc32e8a2f9de46eda62b20
Author: Horea Christian <h.chr@mail.ru>
Date: Tue Mar 10 02:44:09 2015 +0100

installing fsl.sh

Package-Manager: portage-2.2.18

commit 2520b2c4c4fcfabe5157aa3a90db2a40acf927cf
Author: Horea Christian <h.chr@mail.ru>
Date: Thu Mar 5 13:14:10 2015 +0100

removing faulty check

Package-Manager: portage-2.2.17

commit bdd5cc6f1d8eb2a7a07574df2632cc2381a7b9bc
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Mar 4 13:45:42 2015 +0100

added FSLPATH

Package-Manager: portage-2.2.17

commit 39d8751c7be5cabe2b54c34bc19ce943f5dd2bf9
Author: Horea Christian <h.chr@mail.ru>
Date: Fri Feb 20 16:55:11 2015 +0100

bumped version

Package-Manager: portage-2.2.17

commit 3664cf5ac3ef751068f28e873ed19a6e1a2316fe
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Jul 12 05:09:30 2014 +0200

rm-ing bundled file belonging to media-gfx/graphviz, depending on media-gfx/graphviz

commit 7d4e61ebc358cd40d18203fceb5cd896fddf58dc
Author: Horea Christian <h.chr@mail.ru>
Date: Fri Jul 11 01:13:55 2014 +0200

now exeinto /usr/bin

commit 4ff603127115e8e772d1436780f7ec8e1c92d8b4
Author: Horea Christian <h.chr@mail.ru>
Date: Fri Jul 4 23:55:18 2014 +0200

version bump

commit 3f2e1c525e9b34a8a144e1bd6681efed85c5c308
Author: TheChymera <h.chr@mail.ru>
Date: Tue Feb 25 00:05:59 2014 +0200

corrected some typos regarding the eprefix variable

commit d0eae9d82e098990390e2624396cf7585a6a81cf
Author: TheChymera <h.chr@mail.ru>
Date: Tue Oct 29 01:06:58 2013 +0100

linked to 5.0.4 patched versions in the new ebuild

commit 954a9f53e42d9833bdc189a78cd38adc669ba4f2
Author: TheChymera <h.chr@mail.ru>
Date: Mon Oct 21 13:23:27 2013 +0200

Version bump

commit a8751b33e7e35bf956d8210505ad99eaafe95601
Author: TheChymera <h.chr@mail.ru>
Date: Mon Oct 21 13:23:12 2013 +0200

modifications, as suggested by jlec

commit e84177fabbc42a1e6145ff804e99bfa79ea365b1
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Oct 21 02:17:09 2013 +0200

Implemented some of kiwifb's changes which I missed during the last merge.

commit a7bb86e24a1aabb34ef2f90e0fb9d2d01f050ac7
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Oct 21 00:51:26 2013 +0200

Attempt to make multilib work

commit 77bb92098e44575ea1da390551be58cdfe9d92ba
Merge: 83a3e14 a7121a7
Author: Horea Christian <h.chr@mail.ru>
Date: Mon Oct 21 00:46:49 2013 +0200

Merge branch 'fsl' of https://github.com/TheChymera/sci into fsl

Conflicts:
sci-biology/fsl/fsl-5.0.4.ebuild

commit 83a3e1467347976310521e19340112ad3c1b30c4
Author: François Bissey <francois.bissey@canterbury.ac.nz>
Date: Sun Oct 20 23:45:46 2013 +1300

eliminate fsldir and install in standard location. Not sure what to do with tcl.

commit 20b2389a4e8e6eb6b6e1973951a2ad5507e9bbd0
Author: François Bissey <francois.bissey@canterbury.ac.nz>
Date: Sat Oct 19 00:37:24 2013 +1300

uses system package, verbose build.

commit a7121a736a138ef44e3a3d689d69a09d35e6101c
Author: Horea Christian <h.chr@mail.ru>
Date: Thu Oct 17 01:21:27 2013 +0200

no more evironment file, proper slot dependencies, and a few other things.

commit 50307fba54d29be9bf1107292f88b1c9382c1d43
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Oct 16 04:02:55 2013 +0200

reorganized deps

commit fc2502394795bb096a794d433890b6fab9cdea4a
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Oct 16 03:51:08 2013 +0200

added new deps

commit 99016b9857faf03f25916b61862693e975a5b599
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Oct 2 08:20:57 2013 +0200

changed fsldir

commit 5625942c761915d81b45980e6546fbf745bf09e0
Author: Horea Christian <h.chr@mail.ru>
Date: Wed Oct 2 08:17:06 2013 +0200

Changed description, filesdir, added die call.

commit d24505b1760aa8ea6b1fac5cd9db3eec3b54e37f
Author: Christian Burger <christian@krikkel.de>
Date: Tue Oct 1 17:24:42 2013 +0100

sci-biology/fsl now installs to /usr/lib/fsl and sets up user environment

commit ba8a1c64ac11131783d8759d4b3c0a37af6761fd
Author: TheChymera <h.chr@mail.ru>
Date: Fri Sep 27 15:29:50 2013 +0200

Added second addpredicht statement

commit 8c0a660298ca5bda637ad0d62908df267f2662e4
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Sep 21 02:15:25 2013 +0200

Added adpredict to keep the ldconfig call in their makefile from violating the sandbox

commit dc8216fe818ba28f3c0527215bee843dcc22b770
Author: Horea Christian <h.chr@mail.ru>
Date: Sun Sep 15 04:43:43 2013 +0200

commented LDCONFIG = "true"

commit dc51e031d019173b2da53a74f5945fc7aebc3c9d
Author: Horea Christian <h.chr@mail.ru>
Date: Sun Sep 15 02:06:48 2013 +0200

set ldconfig=true

commit 11166b6a34371ec27540df776022c4254651b9d1
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Sep 14 21:31:08 2013 +0200

reformatted src_compile, defined $S

commit 3894df37ef29eeff0a2f1a711f65c066ee26851a
Author: Horea Christian <h.chr@mail.ru>
Date: Sat Sep 14 05:02:18 2013 +0200

Initial FSL commit