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sci-biology/emboss

The European Molecular Biology Open Software Suite - A sequence analysis package

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ChangeLog

# ChangeLog for sci-biology/emboss
# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
# (auto-generated from git log)

*emboss-6.6.0 (09 Aug 2015)
*emboss-6.3.1_p4-r1 (09 Aug 2015)
*emboss-6.0.1 (09 Aug 2015)

09 Aug 2015; Robin H. Johnson <robbat2@gentoo.org> +emboss-6.0.1.ebuild,
+emboss-6.3.1_p4-r1.ebuild, +emboss-6.6.0.ebuild, +files/22emboss,
+files/6.3.1_p4-unbundle-libs.patch, +files/README.Gentoo,
+files/README.gentoo, +files/emboss-5.0.0-as-needed.patch,
+files/emboss-6.3.1_p4-r1_plcol.patch,
+files/emboss-6.6.0_FORTIFY_SOURCE-fix.patch,
+files/emboss-6.6.0_fix-build-system.patch,
+files/emboss-6.6.0_plplot-declarations.patch,
+files/emboss-6.6.0_qa-implicit-declarations.patch,
+files/emboss-README.Gentoo-1, +files/emboss-README.Gentoo-2, +metadata.xml:
proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration
tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this
project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo
developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve
cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014
work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on
the bikeshed

16 Aug 2015; Mikle Kolyada <zlogene@gentoo.org> emboss-6.6.0.ebuild:
amd64 stable wrt bug #529038

Package-Manager: portage-2.2.20.1

24 Aug 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
Use https by default

Convert all URLs for sites supporting encrypted connections from http to
https

Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 Aug 2015; Mike Gilbert <floppym@gentoo.org> metadata.xml:
Revert DOCTYPE SYSTEM https changes in metadata.xml

repoman does not yet accept the https version.
This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450.

Bug: https://bugs.gentoo.org/552720

26 Aug 2015; Mikle Kolyada <zlogene@gentoo.org> emboss-6.6.0.ebuild:
x86 stable wrt bug #529038

Package-Manager: portage-2.2.20.1

26 Aug 2015; Mikle Kolyada <zlogene@gentoo.org> -emboss-6.0.1.ebuild:
Drop old

Package-Manager: portage-2.2.20.1

*emboss-6.0.1 (26 Aug 2015)

26 Aug 2015; Manuel Rüger <mrueg@gentoo.org> +emboss-6.0.1.ebuild:
Restore old version.

This commit reverts 0d040c84fbb38ead35451769d2b65a33af2fbf2a.

Package-Manager: portage-2.2.20.1
RepoMan-Options: --force

27 Aug 2015; Justin Lecher <jlec@gentoo.org> -emboss-6.0.1.ebuild,
-emboss-6.3.1_p4-r1.ebuild:
Drop old

obsolets multiple bugs

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=542274
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=534418
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521604
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=514014
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=493724
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=406279
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=393311
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=382321
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=378443

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>

01 Oct 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
Add missing remote-id type=sourceforge

Signed-off-by: Justin Lecher <jlec@gentoo.org>

24 Jan 2016; Michał Górny <mgorny@gentoo.org> metadata.xml:
Unify quoting in metadata.xml files for machine processing

Force unified quoting in all metadata.xml files since lxml does not
preserve original use of single and double quotes. Ensuring unified
quoting before the process allows distinguishing the GLEP 67-related
metadata.xml changes from unrelated quoting changes.

24 Jan 2016; Michał Górny <mgorny@gentoo.org> metadata.xml:
Replace all herds with appropriate projects (GLEP 67)

Replace all uses of herd with appropriate project maintainers, or no
maintainers in case of herds requested to be disbanded.

24 Jan 2016; Michał Górny <mgorny@gentoo.org> metadata.xml:
Set appropriate maintainer types in metadata.xml (GLEP 67)

26 Apr 2016; Justin Lecher <jlec@gentoo.org> emboss-6.6.0.ebuild,
-files/22emboss, -files/6.3.1_p4-unbundle-libs.patch, -files/README.Gentoo,
-files/emboss-5.0.0-as-needed.patch, -files/emboss-6.3.1_p4-r1_plcol.patch,
-files/emboss-README.Gentoo-1, -files/emboss-README.Gentoo-2:
Clean up of files dir

Move to readme.gentoo-r1.eclass

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=579728

Package-Manager: portage-2.2.28
Signed-off-by: Justin Lecher <jlec@gentoo.org>

28 Jul 2016; Austin English <wizardedit@gentoo.org> emboss-6.6.0.ebuild:
add a blocker for games-action/xbomber #589918

Gentoo-Bug: https://bugs.gentoo.org/589918

Package-Manager: portage-2.3.0