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sci-biology/bambus

Scaffolding Polymorphic Genomes and Metagenomes, a part of AMOS bundle

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ChangeLog

commit 57333cb1cef7d8598fef4fdae69e6263c925b4ec
Author: Horea Christian <chr@chymera.eu>
Date: Fri Feb 17 15:48:08 2023 -0500

sci-biology/bambus: SRC_URI now has HTTPS

Signed-off-by: Horea Christian <chr@chymera.eu>

commit d703c5a43cf46b3e7228f8beaeb66b7bba525638
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Jan 26 11:02:49 2022 +0100

sci-biology/bambus: fix PMS violation

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 129a8a0e6f647116139aa84ccf4a30cebf315860
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 17:14:38 2022 +0100

sci-biology/bambus: drop ED from src_compile

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 9e7fe2f9babe9a495f94e299f4bab5aea1e48db7
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 6 10:30:51 2021 +0100

sci-biology/bambus: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit a04795846141641b7608b245d7ae06d33d721985
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Dec 29 15:15:11 2020 +0100

*/* misc fixes to make repoman happier

- http to https where possible
- remove some blank lines
- quote unqouted variables
- fdo-mime to xdg-utils
- clean up profiles/
- clean up licenses

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Closes: https://github.com/gentoo/sci/pull/999
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit c662d396f4bf1577a5fca3afd3cbd80931a2d517
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Feb 22 03:05:07 2017 +0100

sci-biology/bambus: remove direct dev-lang/perl DEPENDcy

Package-Manager: Portage-2.3.3, Repoman-2.3.1

commit 2518a22efd0348e75c50e742d98be61210916e81
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Sep 1 17:29:10 2016 +0200

sci-biology/bambus: respect EPREFIX also in src/TIGR_Foundation_CC/Makefile

Package-Manager: portage-2.3.0

commit 654417b952acb054c64e9be152306150f47410ed
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Sep 1 17:16:27 2016 +0200

sci-biology/bambus: respect EPREFIX

Package-Manager: portage-2.3.0

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 26e6def0b3eb2ebcf04bf0d1a43f84db0a5b1240
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:49:16 2016 +0100

matadata.xml: Pre Cleanup

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 5a9dcced5751603c1e56bbdf30dcdd39edeb8a53
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Sep 30 16:21:21 2015 +0200

Add missing remote-ids to metadata

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f5615b674dcdbddefac76b816a12458dd895fcb6
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Sep 23 12:15:57 2015 +0200

sci-biology/bambus: Drop unnecessary dep on python

Package-Manager: portage-2.2.21
Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 67aadfe6bebdb0f0aa3e17f20e9ce3ee06a0c425
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 18 01:32:21 2015 +0200

sci-biology/bambus: actually do not install the outdated *.pm files but rely on them from sci-biology/amos

Package-Manager: portage-2.2.18

commit a7b6591d86eac5c9ffc69f5f4f5b9bbb9cb3251a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 18 01:12:24 2015 +0200

sci-biology/bambus: fixed installation of perl-related files

Package-Manager: portage-2.2.18

commit 529d9a71cf4c1b3ae1dc6e437923544e2cc84741
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Mar 31 22:26:02 2015 +0200

sci-biology/bambus: fix installation process and use current perl-module files from amos package instead

Package-Manager: portage-2.2.18

commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100

Sanitize ebuild header

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 7a71d68f2f6ee9e5f715c8521ab73072fb8c91aa
Author: Sébastien Fabbro <bicatali@gentoo.org>
Date: Thu Jun 13 11:36:58 2013 -0700

manifests fixes

commit ac7b80809d0be79d8e0d08354fd707b8566036a2
Author: Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
Date: Sat Jan 14 15:20:31 2012 +0100

Convert to thin manifests (as suggested by alexxy and jlec)

commit 9aa415db19bd5661d638f9e0dcc7d1a2e51cb7a7
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 3 02:12:54 2011 +0100

sci-biology/bambus: added goBambus.pl script and perl/python dependencies

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

commit a0468b47ed62d32096893506bc7ffa4187c1fac0
Author: Martin Mokrejs <mmokrejs@gentoo.org>
Date: Thu Jan 6 11:49:03 2011 +0100

fixed my email in affected metadata.xml files

commit b0d303e2644771d74c9dd04c4994fa7ecf90f038
Author: Martin Mokrejs <mmokrejs@gentoo.org>
Date: Sun Dec 5 15:34:41 2010 +0100

sci-biology/bambus: assembly scaffolder

(Portage version: 2.1.9.24/git/Linux i686, unsigned Manifest commit)