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sci-biology/LINKS

Scaffold genome assemblies by Chromium/PacBio/Nanopore reads

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ChangeLog

commit 52f4c2c9ae553f0094fc30b52b349dca5ae13abd
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 18:14:40 2022 +0100

sci-biology/LINKS: fix dep on swig

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 58a63be80af5b547d2f6ceaa6377a84365ccfe41
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 14:28:59 2022 +0100

sci-biology/LINKS: bump to 2.0.1

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 5db6563203432be7454b285bba50fc79daaac21d
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Mon Nov 29 12:41:16 2021 +0100

sci-biology/LINKS: remove keywords

This package is supposed to be executed from within compiled
source tree. See comments in the ebuild what needs to be fixed.

https://github.com/bcgsc/LINKS/pull/59
https://github.com/bcgsc/LINKS/issues/31

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>

commit 377d1d836ceacf807b6c0eec677a841eb8d45c2c
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sun Oct 17 17:56:52 2021 +0200

sci-biology/LINKS: install the tools/*.pl files from archive

... until https://github.com/bcgsc/LINKS/issues/31 is fixed.

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>

commit f4a311c42b306a1a49fa91c28203f388d324d326
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Sun Oct 17 17:42:43 2021 +0200

sci-biology/LINKS: new package

The LINKS perl script probably needs some sed hackery to eventually
start using system-wide btl_bloomfilter file BloomFilter.i and also
perl's CORE/EXTERN.h.

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>