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sci-CRAN/Seurat

Tools for Single Cell Genomics

Screenshots

  • Seurat-5.0.1
    ~amd64 ~x64-macos ~arm64-macos
    r_suggests_ape r_suggests_biobase r_suggests_biocgenerics r_suggests_data_table r_suggests_delayedarray r_suggests_enrichr r_suggests_ggrastr r_suggests_harmony r_suggests_hdf5r r_suggests_iranges r_suggests_limma r_suggests_metap r_suggests_mixtools r_suggests_r_utils r_suggests_rfast2 r_suggests_rsvd r_suggests_s4vectors r_suggests_testthat r_suggests_vgam byte-compile

    View      Download      Browse     License: MIT   
    Overlay: R_Overlay
  • Seurat-5.0.0
    ~amd64 ~x64-macos ~arm64-macos
    r_suggests_ape r_suggests_biobase r_suggests_biocgenerics r_suggests_data_table r_suggests_delayedarray r_suggests_enrichr r_suggests_ggrastr r_suggests_harmony r_suggests_hdf5r r_suggests_iranges r_suggests_limma r_suggests_metap r_suggests_mixtools r_suggests_r_utils r_suggests_rfast2 r_suggests_rsvd r_suggests_s4vectors r_suggests_testthat r_suggests_vgam byte-compile

    View      Download      Browse     License: MIT   
    Overlay: R_Overlay
  • Seurat-4.4.0
    ~amd64 ~x64-macos ~arm64-macos
    r_suggests_ape r_suggests_biobase r_suggests_biocgenerics r_suggests_data_table r_suggests_enrichr r_suggests_ggrastr r_suggests_hdf5r r_suggests_iranges r_suggests_limma r_suggests_metap r_suggests_mixtools r_suggests_r_utils r_suggests_rfast2 r_suggests_rsvd r_suggests_s4vectors r_suggests_testthat r_suggests_vgam byte-compile

    View      Download      Browse     License: MIT   
    Overlay: R_Overlay
  • Seurat-4.3.0.1
    ~amd64
    r_suggests_ape r_suggests_biobase r_suggests_biocgenerics r_suggests_data_table r_suggests_enrichr r_suggests_hdf5r r_suggests_iranges r_suggests_limma r_suggests_metap r_suggests_mixtools r_suggests_r_utils r_suggests_rfast2 r_suggests_rsvd r_suggests_s4vectors r_suggests_testthat r_suggests_vgam byte-compile

    View      Download      Browse     License: MIT   
    Overlay: R_Overlay

Runtime Dependencies

Seurat-5.0.1

>=dev-lang/R-4.0.0
virtual/Matrix
sci-CRAN/reticulate
>=sci-CRAN/SeuratObject-5.0.0
sci-CRAN/png
sci-CRAN/shiny
virtual/KernSmooth
sci-CRAN/pbapply
sci-CRAN/RColorBrewer
virtual/cluster
>=sci-CRAN/leiden-0.3.1
virtual/MASS
sci-CRAN/miniUI
sci-CRAN/ROCR
>=sci-CRAN/RcppAnnoy-0.0.18
>=sci-CRAN/sctransform-0.4.1
sci-CRAN/spatstat_geom
>=sci-CRAN/Rcpp-1.0.7
virtual/Matrix
sci-CRAN/RSpectra
>=sci-CRAN/scattermore-1.2
sci-CRAN/httr
sci-CRAN/igraph
sci-CRAN/cowplot
sci-CRAN/fitdistrplus
sci-CRAN/future_apply
>=sci-CRAN/ggplot2-3.3.0
sci-CRAN/RcppHNSW
sci-CRAN/patchwork
sci-CRAN/progressr
sci-CRAN/ggridges
sci-CRAN/Rtsne
sci-CRAN/scales
sci-CRAN/purrr
sci-CRAN/RANN
sci-CRAN/lmtest
>=sci-CRAN/plotly-4.9.0
sci-CRAN/lifecycle
sci-CRAN/tibble
>=sci-CRAN/uwot-0.1.10
sci-CRAN/rlang
sci-CRAN/ica
sci-CRAN/fastDummies
sci-CRAN/future
>=sci-CRAN/generics-0.1.3
sci-CRAN/ggrepel
sci-CRAN/irlba
sci-CRAN/jsonlite
sci-CRAN/spatstat_explore
>=sci-CRAN/Rcpp-0.11.0
sci-CRAN/RcppEigen
sci-CRAN/RcppProgress

r_suggests_ape?
      ( sci-CRAN/ape )

r_suggests_biobase?
      ( sci-BIOC/Biobase )

r_suggests_biocgenerics?
      ( sci-BIOC/BiocGenerics )

r_suggests_data_table?
      ( sci-CRAN/data_table )

r_suggests_delayedarray?
      ( sci-BIOC/DelayedArray )

r_suggests_enrichr?
      ( sci-CRAN/enrichR )

r_suggests_ggrastr?
      ( sci-CRAN/ggrastr )

r_suggests_harmony?
      ( sci-CRAN/harmony )

r_suggests_hdf5r?
      ( sci-CRAN/hdf5r )

r_suggests_iranges?
      ( sci-BIOC/IRanges )

r_suggests_limma?
      ( sci-BIOC/limma )

r_suggests_metap?
      ( sci-CRAN/metap )

r_suggests_mixtools?
      ( sci-CRAN/mixtools )

r_suggests_r_utils?
      ( sci-CRAN/R_utils )

r_suggests_rfast2?
      ( sci-CRAN/Rfast2 )

r_suggests_rsvd?
      ( sci-CRAN/rsvd )

r_suggests_s4vectors?
      ( sci-BIOC/S4Vectors )

r_suggests_testthat?
      ( sci-CRAN/testthat )

r_suggests_vgam?
      ( sci-CRAN/VGAM )

dev-lang/R:=

Seurat-5.0.0

sci-CRAN/lifecycle
sci-CRAN/png
>=sci-CRAN/sctransform-0.4.1
sci-CRAN/tibble
sci-CRAN/spatstat_geom
>=sci-CRAN/uwot-0.1.10
sci-CRAN/fastDummies
sci-CRAN/future
>=sci-CRAN/generics-0.1.3
sci-CRAN/ggrepel
sci-CRAN/ica
sci-CRAN/irlba
sci-CRAN/patchwork
sci-CRAN/purrr
>=dev-lang/R-4.0.0
>=sci-CRAN/SeuratObject-5.0.0
sci-CRAN/RColorBrewer
>=sci-CRAN/scattermore-1.2
virtual/KernSmooth
sci-CRAN/RANN
>=sci-CRAN/Rcpp-1.0.7
>=sci-CRAN/RcppAnnoy-0.0.18
virtual/Matrix
sci-CRAN/Rtsne
virtual/cluster
>=sci-CRAN/leiden-0.3.1
sci-CRAN/lmtest
virtual/Matrix
sci-CRAN/pbapply
sci-CRAN/rlang
sci-CRAN/miniUI
sci-CRAN/igraph
sci-CRAN/cowplot
sci-CRAN/fitdistrplus
sci-CRAN/future_apply
>=sci-CRAN/ggplot2-3.3.0
sci-CRAN/ggridges
sci-CRAN/httr
sci-CRAN/jsonlite
sci-CRAN/scales
virtual/MASS
sci-CRAN/progressr
sci-CRAN/spatstat_explore
>=sci-CRAN/plotly-4.9.0
sci-CRAN/RcppHNSW
sci-CRAN/reticulate
sci-CRAN/ROCR
sci-CRAN/shiny
sci-CRAN/RSpectra
>=sci-CRAN/Rcpp-0.11.0
sci-CRAN/RcppProgress
sci-CRAN/RcppEigen

r_suggests_ape?
      ( sci-CRAN/ape )

r_suggests_biobase?
      ( sci-BIOC/Biobase )

r_suggests_biocgenerics?
      ( sci-BIOC/BiocGenerics )

r_suggests_data_table?
      ( sci-CRAN/data_table )

r_suggests_delayedarray?
      ( sci-BIOC/DelayedArray )

r_suggests_enrichr?
      ( sci-CRAN/enrichR )

r_suggests_ggrastr?
      ( sci-CRAN/ggrastr )

r_suggests_harmony?
      ( sci-CRAN/harmony )

r_suggests_hdf5r?
      ( sci-CRAN/hdf5r )

r_suggests_iranges?
      ( sci-BIOC/IRanges )

r_suggests_limma?
      ( sci-BIOC/limma )

r_suggests_metap?
      ( sci-CRAN/metap )

r_suggests_mixtools?
      ( sci-CRAN/mixtools )

r_suggests_r_utils?
      ( sci-CRAN/R_utils )

r_suggests_rfast2?
      ( sci-CRAN/Rfast2 )

r_suggests_rsvd?
      ( sci-CRAN/rsvd )

r_suggests_s4vectors?
      ( sci-BIOC/S4Vectors )

r_suggests_testthat?
      ( sci-CRAN/testthat )

r_suggests_vgam?
      ( sci-CRAN/VGAM )

dev-lang/R:=

Seurat-4.4.0

sci-CRAN/future
sci-CRAN/png
>=sci-CRAN/Rcpp-1.0.7
sci-CRAN/cowplot
virtual/Matrix
sci-CRAN/miniUI
sci-CRAN/reticulate
sci-CRAN/Rtsne
>=sci-CRAN/scattermore-1.2
sci-CRAN/future_apply
sci-CRAN/igraph
sci-CRAN/spatstat_explore
sci-CRAN/tibble
sci-CRAN/scales
sci-CRAN/RANN
sci-CRAN/ica
sci-CRAN/irlba
>=sci-CRAN/leiden-0.3.1
virtual/Matrix
sci-CRAN/shiny
>=sci-CRAN/ggplot2-3.3.0
virtual/KernSmooth
sci-CRAN/lmtest
>=sci-CRAN/plotly-4.9.0
sci-CRAN/progressr
>=sci-CRAN/SeuratObject-4.1.4
virtual/cluster
sci-CRAN/jsonlite
virtual/MASS
sci-CRAN/pbapply
sci-CRAN/spatstat_geom
>=sci-CRAN/uwot-0.1.14
>=dev-lang/R-4.0.0
sci-CRAN/ggrepel
sci-CRAN/ggridges
>=sci-CRAN/RcppAnnoy-0.0.18
sci-CRAN/rlang
sci-CRAN/fitdistrplus
sci-CRAN/httr
sci-CRAN/patchwork
sci-CRAN/purrr
sci-CRAN/RColorBrewer
sci-CRAN/ROCR
>=sci-CRAN/sctransform-0.4.0
>=sci-CRAN/Rcpp-0.11.0
sci-CRAN/RcppProgress
sci-CRAN/RcppEigen

r_suggests_ape?
      ( sci-CRAN/ape )

r_suggests_biobase?
      ( sci-BIOC/Biobase )

r_suggests_biocgenerics?
      ( sci-BIOC/BiocGenerics )

r_suggests_data_table?
      ( sci-CRAN/data_table )

r_suggests_enrichr?
      ( sci-CRAN/enrichR )

r_suggests_ggrastr?
      ( sci-CRAN/ggrastr )

r_suggests_hdf5r?
      ( sci-CRAN/hdf5r )

r_suggests_iranges?
      ( sci-BIOC/IRanges )

r_suggests_limma?
      ( sci-BIOC/limma )

r_suggests_metap?
      ( sci-CRAN/metap )

r_suggests_mixtools?
      ( sci-CRAN/mixtools )

r_suggests_r_utils?
      ( sci-CRAN/R_utils )

r_suggests_rfast2?
      ( sci-CRAN/Rfast2 )

r_suggests_rsvd?
      ( sci-CRAN/rsvd )

r_suggests_s4vectors?
      ( sci-BIOC/S4Vectors )

r_suggests_testthat?
      ( sci-CRAN/testthat )

r_suggests_vgam?
      ( sci-CRAN/VGAM )

dev-lang/R:=

Seurat-4.3.0.1

sci-CRAN/httr
sci-CRAN/ROCR
sci-CRAN/rlang
>=sci-CRAN/leiden-0.3.1
sci-CRAN/Rtsne
sci-CRAN/shiny
sci-CRAN/spatstat_explore
sci-CRAN/igraph
sci-CRAN/miniUI
sci-CRAN/scales
>=sci-CRAN/uwot-0.1.14
sci-CRAN/fitdistrplus
sci-CRAN/future
sci-CRAN/future_apply
sci-CRAN/tibble
>=sci-CRAN/sctransform-0.3.5
>=dev-lang/R-4.0.0
sci-CRAN/ica
sci-CRAN/irlba
sci-CRAN/lmtest
virtual/Matrix
sci-CRAN/png
>=sci-CRAN/RcppAnnoy-0.0.18
sci-CRAN/ggrepel
virtual/KernSmooth
virtual/MASS
sci-CRAN/RColorBrewer
virtual/cluster
sci-CRAN/patchwork
sci-CRAN/pbapply
sci-CRAN/progressr
>=sci-CRAN/Rcpp-1.0.7
sci-CRAN/reticulate
sci-CRAN/cowplot
>=sci-CRAN/scattermore-0.7
>=sci-CRAN/SeuratObject-4.1.3
sci-CRAN/jsonlite
>=sci-CRAN/ggplot2-3.3.0
sci-CRAN/ggridges
virtual/Matrix
>=sci-CRAN/plotly-4.9.0
sci-CRAN/RANN
sci-CRAN/spatstat_geom
>=sci-CRAN/Rcpp-0.11.0
sci-CRAN/RcppProgress
sci-CRAN/RcppEigen

r_suggests_ape?
      ( sci-CRAN/ape )

r_suggests_biobase?
      ( sci-BIOC/Biobase )

r_suggests_biocgenerics?
      ( sci-BIOC/BiocGenerics )

r_suggests_data_table?
      ( sci-CRAN/data_table )

r_suggests_enrichr?
      ( sci-CRAN/enrichR )

r_suggests_hdf5r?
      ( sci-CRAN/hdf5r )

r_suggests_iranges?
      ( sci-BIOC/IRanges )

r_suggests_limma?
      ( sci-BIOC/limma )

r_suggests_metap?
      ( sci-CRAN/metap )

r_suggests_mixtools?
      ( sci-CRAN/mixtools )

r_suggests_r_utils?
      ( sci-CRAN/R_utils )

r_suggests_rfast2?
      ( sci-CRAN/Rfast2 )

r_suggests_rsvd?
      ( sci-CRAN/rsvd )

r_suggests_s4vectors?
      ( sci-BIOC/S4Vectors )

r_suggests_testthat?
      ( sci-CRAN/testthat )

r_suggests_vgam?
      ( sci-CRAN/VGAM )

dev-lang/R:=