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SnapATAC2: Single-cell epigenomics analysis pipeline

Screenshots

  • snapatac2-2.8.0
    ~amd64 ~x86
    recommend test python_targets_python3_11 python_targets_python3_12

    View      Download      Browse     License: MIT   
    Overlay: pypi

Runtime Dependencies

snapatac2-2.8.0



dev-python/anndata[python_targets_python3_11
      (-)
?
,python_targets_python3_12
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?
]


dev-python/kaleido[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/multiprocess[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/MACS3[python_targets_python3_11
      (-)
?
,python_targets_python3_12
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?
]


dev-python/natsort[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/numpy-2.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/pandas-2.1.2[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/plotly-6.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/polars[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/pooch-2.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/igraph[python_targets_python3_11
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,python_targets_python3_12
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?
]


dev-python/pyarrow[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/pyfaidx[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


dev-python/rustworkx[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/scipy-2.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


<dev-python/scikit-learn-2.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


>=dev-python/tqdm-4.62[python_targets_python3_11
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?
,python_targets_python3_12
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?
]


>=dev-python/typeguard-4.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
]

recommend?
      ( dev-python/scanorama[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/harmonypy[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/xgboost[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/umap-learn[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/scanpy[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/scvi-tools[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/scikit-misc[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

recommend?
      ( dev-python/magic-impute[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

test?
      ( dev-python/pytest[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

test?
      ( ~dev-python/hypothesis-6.72.4[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
] )

python_targets_python3_11?
      ( dev-lang/python:3.11 )

python_targets_python3_12?
      ( dev-lang/python:3.12 )