Gentoo Portage Overlays - dev-python/snakemake

dev-python/snakemake

Make-like task language

Screenshots

https://snakemake.readthedocs.io

snakemake-8.16.0

~amd64

test python_targets_python3_11 python_targets_python3_12

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Browse License: MIT

Overlay: science

snakemake-7.32.4

~amd64

doc test python_targets_python3_10 python_targets_python3_11 python_targets_python3_12

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Browse License: MIT

Overlay: science

ChangeLog USE Flags Dependencies Reverse Deps Related Bugs

ChangeLog

commit cb5227c8a907fbd33f09dc8f98c382c6b8568042
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Fri Nov 15 08:37:26 2024 +0100

*/*: Rename dev-python/{jinja → jinja2}

Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>

commit ce81317b1bfbf175d52799a64be6d1ced42b57cc
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Mon Jul 8 19:50:58 2024 +0000

dev-python/snakemake: version bump 8.16.0

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 63b1dce345203efaf4415c609c935abdccc5e1da
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Mon Jun 17 22:00:16 2024 +0000

dev-python/snakemake: version 7.32.4 is compat with py3.12

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Closes: https://github.com/gentoo/sci/pull/1278
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit c1fc331978eedc90dc53ce4cd70a106d0526caa8
Author: Michael Schubert <mschu.dev@gmail.com>
Date: Mon Jun 17 21:42:14 2024 +0000

dev-python/snakemake: add version 8

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 3d9beced9a14c8fce6af96e67e7fe864ee2eee1b
Author: mschubertv <mschu.dev@gmail.com>
Date: Mon Dec 18 13:03:35 2023 +0000

dev-python/snakemake: version bump 7.32.4

Closes: https://github.com/gentoo/sci/pull/1220
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 941a0284713a61f2eee8eae0587ba579da503e95
Author: mschubertv <mschu.dev@gmail.com>
Date: Thu Aug 17 08:45:15 2023 +0000

dev-python/snakemake: version bump 7.32.3

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Closes: https://github.com/gentoo/sci/pull/1208

commit 7b331f81eaab5fcd252a31f65cedf3af2a62e1c3
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Mar 17 14:33:26 2023 +0100

dev-python/snakemake: add 7.24.2, drop 5.32.2

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 739bbba2330bc2891ca90633e1fc70d56a08eece
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Mar 17 13:19:12 2023 +0100

Revert "dev-python/snakemake: treeclean"

This reverts commit f853476e85be13cb1ac9f36e8fbb25ca5e12c464.

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit f853476e85be13cb1ac9f36e8fbb25ca5e12c464
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Fri Feb 10 13:36:50 2023 +0100

dev-python/snakemake: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500

add github remote-id when possible

Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 26ac3dfb9d563bba6da49164d094b276762490b6
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sun Jul 3 10:30:19 2022 +0200

dev-python/snakemake: configargparse renamed to ConfigArgParse

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 6615f9c3c86e9699a54aebb363921a4589df7412
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sun Feb 13 17:05:45 2022 +0100

dev-python/snakemake: drop python@g.o

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 3512e4e0da86828c23d307c88319e0210f51a65f
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Jan 26 11:24:33 2022 +0100

dev-python/snakemake: bump python compat

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit bf0b7c9904f8845d1411a6423f1443a21aa70d85
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Feb 13 14:48:28 2021 +0100

dev-python/snakemake: re-gen manifest

why does this keep happening?

https://github.com/gentoo/sci/pull/1052

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 990fd48f1fa182acb02b2a4922b06ab19ea7d01a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Fri Feb 12 16:56:39 2021 +0100

dev-python/snakemake: version bump 5.32.2

old version does not fetch, broken manifest

Closes: https://github.com/gentoo/sci/pull/1052
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 8c5c910f1881b80699c71e5fa46f90c7bb82ede3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Wed Dec 30 17:34:00 2020 +0100

dev-python/snakemake: version bump, EAPI bump, bump py targets

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>

commit fa40eeaf466d743e8470fa6ada7436ce5dd44e92
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Jan 27 14:23:56 2020 +0800

dev-python/snakemake: again.

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Benda Xu <heroxbd@gentoo.org>

commit 8c30ddaca10c7c0347722e817fa855fa954acb52
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Jan 27 14:23:09 2020 +0800

dev-python/snakemake: update the HOMEPAGE.

Fix the ebuild header.

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Benda Xu <heroxbd@gentoo.org>

commit 216e1730765a7a8c69a47a5175f47d8d75dcc0ff
Author: Marcin Wozniak <kaczor982@gmail.com>
Date: Tue Dec 31 16:36:06 2019 +0100

dev-python/snakemake: bump to 5.10.0.

Drop python3_, bump to EAPI=7.

Closes: https://github.com/gentoo/sci/pull/935
Closes: https://github.com/gentoo/sci/pull/901
Closes: https://github.com/gentoo/sci/issues/938
Bug: https://bugs.gentoo.org/695742
Signed-off-by: Benda Xu <heroxbd@gentoo.org>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 61094665a0622c77dea66a04ec74b5e4fd71bb46
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Apr 29 10:50:07 2017 +0100

Update remote ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit daeb2eded741c715ff721e2710a65663ef83621e
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Oct 28 16:23:40 2016 +0200

Bulk fix of obsolete python versions

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f3549a2aa09ba7a4762309b4c26832f5dbea83b9
Author: mschubert <mschu.dev@gmail.com>
Date: Fri Oct 16 16:53:11 2015 +0100

dev-python/snakemake-3.4.2: new ebuild