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Large-scale generative pretrain of single cell using transformer.

Screenshots

  • scgpt-0.2.4
    ~amd64 ~x86
    python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: MIT   
    Overlay: pypi

Runtime Dependencies

scgpt-0.2.4





>=dev-python/pandas-1.3.5[python_targets_python3_11
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dev-python/scvi-tools[python_targets_python3_11
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dev-python/scanpy[python_targets_python3_11
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dev-python/torch[python_targets_python3_11
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dev-python/torchtext[python_targets_python3_11
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dev-python/numba[python_targets_python3_11
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dev-python/scikit-misc[python_targets_python3_11
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dev-python/umap-learn[python_targets_python3_11
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dev-python/leidenalg[python_targets_python3_11
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dev-python/datasets[python_targets_python3_11
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<dev-python/typing-extensions-5.0.0[python_targets_python3_11
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dev-python/scib[python_targets_python3_11
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dev-python/cell-gears[python_targets_python3_11
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dev-python/orbax[python_targets_python3_11
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python_targets_python3_11?
      ( dev-lang/python:3.11 )

python_targets_python3_12?
      ( dev-lang/python:3.12 )

python_targets_python3_13?
      ( dev-lang/python:3.13 )

python_targets_python3_14?
      ( dev-lang/python:3.14 )