dev-python/pyxem
multi-dimensional diffraction microscopy
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pyxem-0.21.0~amd64 ~x86dask dev doc gpu tests python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 python_targets_python3_14
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pyxem-0.21.0~amd64python_targets_python3_12 python_targets_python3_13 python_targets_python3_14
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Browse License: GPL-3 Overlay: stuff
ChangeLog
commit 1df5a8f140a0addf22a83408cfd173162576615c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat May 9 22:32:18 2026 +0200
dev-python/pyxem: fix dead pyxem.github.io HOMEPAGE
pyxem.github.io returns 404; PyPI metadata points HOMEPAGE at the github source repo.
Replace HOMEPAGE with the github URL plus the PyPI project page, and add a github
remote-id.
commit 946b3d5e6f85aa6d17632eb69d8c14152e056548
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 23:16:52 2026 +0200
*/*: normalize metadata.xml DTD URL and indent
Repo-wide sweep: 144 metadata.xml files updated to use the
https://www.gentoo.org/dtd/metadata.dtd DTD URL (was http://) and
2-space indentation (was tabs). Maintainer blocks left untouched —
the 2026-04-22 normalization sweep added <name> alongside <email>
where the maintainer was Ivan, but third-party maintainer entries
(lebedev.vasya@gmail.com, megagreener@gmail.com, brothermechanic@gmail.com,
etc.) keep their email-only blocks since we can't safely guess the
corresponding <name>.
pkgcheck stays silent on all metadata-* and maintainer-* checks.
commit 3e8beb92ab1f62c9afd6c1f0e1dd5cb3a4467bae
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 13:53:14 2026 +0200
dev-python/pyxem: align RDEPEND with upstream install_requires per version
Cross-checked the unpacked sdist of each version. The ebuilds had been
declaring a static, version-agnostic dep list with no version bounds
and dropping orix entirely; orix is upstream-required since 0.13.x and
the source treats it as a hard dep.
- 0.13.3: add orix>=0.3 plus the upstream lower bounds on
scikit-image/scikit-learn/hyperspy/lmfit/diffsims (with <0.5 cap).
- 0.15.0: add dask, numpy, orix>=0.9, psutil, scipy and transforms3d
that upstream introduced in this release; tighten bounds to match.
- 0.21.0: add dask, h5py, numpy, orix>=0.12.1, pooch, psutil, scipy,
shapely>2.0.0 and transforms3d; bump matplotlib bound to >=3.7.5
and hyperspy to >=2.0.
The newly-added dev-python/orix package satisfies the missing
provider in all three versions.
commit 46ed96a3888d268d157e3cbdafb0772ef1208934
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 00:42:09 2026 +0200
dev-python/pyxem: drop bogus python USE flag
Standard distutils-r1 cleanup across 0.13.3, 0.15.0, 0.21.0.
commit b91cd93a12cb39be1b4976cdc1af27ca13ce34e5
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 15:16:42 2026 +0200
*/*: bump PYTHON_COMPAT from python3_ to python3_
::gentoo has dropped python3.11 from most of the scientific Python
stack - scipy, pandas, ipython, sphinx, sympy, etc. all target
python3_ now. Overlay ebuilds still claiming python3_11
support therefore fail to resolve their PYTHON_USEDEP=[...,
python_targets_python3_11(-),...] clauses against those upstream
packages, which is the bulk of pkgcheck's NonsolvableDeps noise.
Sweep PYTHON_COMPAT across the overlay accordingly. Files touched
include 193 pure-python3 ebuilds plus 4 sci-libs/pycifrw ebuilds that
retain the python2_7 target. Commented-out COMPAT lines and one
ebuild using a custom $ array are left alone.
pkgcheck dropped from 710 to 475 lines after this change; specifically
NonsolvableDepsIn{Dev,Stable} fell from 391 to 182 combined.
Users on a python3.11 profile lose access to the updated versions in
this overlay, mirroring what ::gentoo already did to the rest of the
scientific stack.
Signed-off-by: Raukaan Cogbrother <cogbrother@raukaan.local>
commit 333a849082e704941d018a7f0b99678eda18904f
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 01:07:29 2026 +0200
*/*: bump PYTHON_COMPAT to python3_
Match the ::gentoo convention (main tree dropped 3.9 / 3.10 support
a while ago). Three mechanical substitutions:
- python3_ -> python3_ (189 ebuilds)
- python3_ -> python3_ (llvmlite)
- python2_7 python3_ -> python2_7 python3_ (pycifrw)
Leaves the legacy python2_7-only ebuilds and dev-python/cython
(special PYTHON_TESTED pattern on the 0.29 series) untouched.
commit f23ece73c4451e2377c17d8b90acb53bee608563
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 15 21:28:34 2026 +0100
*/*: UPD header, Happy New Year
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit faa1a6bd0ab2591e7f00f30c0e9a6e14a81f56b3
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 12:32:55 2025 +0100
Corrected missing blank line after EAPI warning
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit bd56ad8c4cfa96514317be4d851cb4fcbd6b8802
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 10:40:56 2025 +0100
*/*: adjusting python compat to 3.9 to 3.14
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 95203642bcc0da459a49c55226fc4bec6fe8079c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Dec 10 23:59:26 2025 +0100
dev-python/pyxem: add pypi upstream metadata
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 75d55441dbb2e55a7102e44b643e2e17cdfbc05d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Oct 17 21:58:20 2025 +0200
finally upd year to 2025 :)
commit 2c649067a608209dc9cb87ba1d818c9c2561a3d2
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Sep 21 18:54:35 2025 +0100
pyxem
commit b451ac3b81ed540a5ce0bbef96d542cd2a2a0dcd
Author: istitov <istitov@github>
Date: Mon Feb 12 10:45:30 2024 +0100
upd copyright to 2024
commit c3608abdca73662012b2024eddc0ab62f856ff05
Author: istitov <istitov@github>
Date: Mon Feb 12 10:41:34 2024 +0100
sci-libs/scikit-image -> dev-python/scikit-image
commit 0b7fcf9639be3e82b30db7da1cc4785887b54326
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat Nov 25 04:52:49 2023 +0300
mass updated PYTHON_COMPAT for python:3
commit 48945780358f03a15149c157357fee6dafea2c53
Author: Ivan S. Titov <istitov@github.com>
Date: Thu Sep 14 23:32:55 2023 +0200
upd: header
commit 460457a9d445897ba12ad921a40bacde927de379
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:16:33 2023 +0100
Add files via upload
commit 465b72a5a42168d7d3bce20b8086f0e0b6503eab
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:16:07 2023 +0100
Delete pyxem-0.13.2.ebuild
commit 4563b4cae323ed9661c5f7b72014e27710c1cfbb
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:14:07 2023 +0100
Delete pyxem-0.12.1.ebuild
commit 3087a099a9175f39352c4d67c20c0b9f9faab3e6
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:13:59 2023 +0100
Delete pyxem-0.11.0.ebuild
commit 47d8522b92a08c6852185fb9d0c81bbabf1e1305
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Apr 11 23:48:44 2023 +0100
Add files via upload
commit d786509ba8df71e12952938f6351402ec7ecfbc7
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Jul 20 23:16:50 2022 +0300
upd date in ebuilds
commit db4488aba24a44e493d596496530c691819c86be
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Sat Apr 23 17:33:32 2022 +0100
pyxem version bump
commit a55d739e421a9474314d166363781cc583673caf
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Thu Jun 3 01:22:39 2021 +0100
pyxem
commit 5ae9c641546f61cf4e7bc8f7f6df07df270d69c7
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 28 19:25:41 2021 +0100
corrected gentoo header
commit 093333fd78af13ce9441a2999977ae583bfb81b5
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Sun Nov 15 19:09:44 2020 +0000
dev-python/pyxem corrected
commit eebd027b75f6869eceb06f8fa1fd67b76ce2ab7b
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Fri Aug 28 00:38:16 2020 +0000
py3_6 dropped for pyxem
commit 986bb2b37de88d6bc0b10dcd7a0c24480b08ffe0
Author: LebedevV <vasya_lebedev@mail.ru>
Date: Sat Jul 18 18:30:51 2020 +0000
pyxem with deps added
repomaned with deps
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat May 9 22:32:18 2026 +0200
dev-python/pyxem: fix dead pyxem.github.io HOMEPAGE
pyxem.github.io returns 404; PyPI metadata points HOMEPAGE at the github source repo.
Replace HOMEPAGE with the github URL plus the PyPI project page, and add a github
remote-id.
commit 946b3d5e6f85aa6d17632eb69d8c14152e056548
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 23:16:52 2026 +0200
*/*: normalize metadata.xml DTD URL and indent
Repo-wide sweep: 144 metadata.xml files updated to use the
https://www.gentoo.org/dtd/metadata.dtd DTD URL (was http://) and
2-space indentation (was tabs). Maintainer blocks left untouched —
the 2026-04-22 normalization sweep added <name> alongside <email>
where the maintainer was Ivan, but third-party maintainer entries
(lebedev.vasya@gmail.com, megagreener@gmail.com, brothermechanic@gmail.com,
etc.) keep their email-only blocks since we can't safely guess the
corresponding <name>.
pkgcheck stays silent on all metadata-* and maintainer-* checks.
commit 3e8beb92ab1f62c9afd6c1f0e1dd5cb3a4467bae
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 13:53:14 2026 +0200
dev-python/pyxem: align RDEPEND with upstream install_requires per version
Cross-checked the unpacked sdist of each version. The ebuilds had been
declaring a static, version-agnostic dep list with no version bounds
and dropping orix entirely; orix is upstream-required since 0.13.x and
the source treats it as a hard dep.
- 0.13.3: add orix>=0.3 plus the upstream lower bounds on
scikit-image/scikit-learn/hyperspy/lmfit/diffsims (with <0.5 cap).
- 0.15.0: add dask, numpy, orix>=0.9, psutil, scipy and transforms3d
that upstream introduced in this release; tighten bounds to match.
- 0.21.0: add dask, h5py, numpy, orix>=0.12.1, pooch, psutil, scipy,
shapely>2.0.0 and transforms3d; bump matplotlib bound to >=3.7.5
and hyperspy to >=2.0.
The newly-added dev-python/orix package satisfies the missing
provider in all three versions.
commit 46ed96a3888d268d157e3cbdafb0772ef1208934
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Apr 29 00:42:09 2026 +0200
dev-python/pyxem: drop bogus python USE flag
Standard distutils-r1 cleanup across 0.13.3, 0.15.0, 0.21.0.
commit b91cd93a12cb39be1b4976cdc1af27ca13ce34e5
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 15:16:42 2026 +0200
*/*: bump PYTHON_COMPAT from python3_ to python3_
::gentoo has dropped python3.11 from most of the scientific Python
stack - scipy, pandas, ipython, sphinx, sympy, etc. all target
python3_ now. Overlay ebuilds still claiming python3_11
support therefore fail to resolve their PYTHON_USEDEP=[...,
python_targets_python3_11(-),...] clauses against those upstream
packages, which is the bulk of pkgcheck's NonsolvableDeps noise.
Sweep PYTHON_COMPAT across the overlay accordingly. Files touched
include 193 pure-python3 ebuilds plus 4 sci-libs/pycifrw ebuilds that
retain the python2_7 target. Commented-out COMPAT lines and one
ebuild using a custom $ array are left alone.
pkgcheck dropped from 710 to 475 lines after this change; specifically
NonsolvableDepsIn{Dev,Stable} fell from 391 to 182 combined.
Users on a python3.11 profile lose access to the updated versions in
this overlay, mirroring what ::gentoo already did to the rest of the
scientific stack.
Signed-off-by: Raukaan Cogbrother <cogbrother@raukaan.local>
commit 333a849082e704941d018a7f0b99678eda18904f
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Tue Apr 21 01:07:29 2026 +0200
*/*: bump PYTHON_COMPAT to python3_
Match the ::gentoo convention (main tree dropped 3.9 / 3.10 support
a while ago). Three mechanical substitutions:
- python3_ -> python3_ (189 ebuilds)
- python3_ -> python3_ (llvmlite)
- python2_7 python3_ -> python2_7 python3_ (pycifrw)
Leaves the legacy python2_7-only ebuilds and dev-python/cython
(special PYTHON_TESTED pattern on the 0.29 series) untouched.
commit f23ece73c4451e2377c17d8b90acb53bee608563
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 15 21:28:34 2026 +0100
*/*: UPD header, Happy New Year
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit faa1a6bd0ab2591e7f00f30c0e9a6e14a81f56b3
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 12:32:55 2025 +0100
Corrected missing blank line after EAPI warning
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit bd56ad8c4cfa96514317be4d851cb4fcbd6b8802
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Dec 11 10:40:56 2025 +0100
*/*: adjusting python compat to 3.9 to 3.14
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 95203642bcc0da459a49c55226fc4bec6fe8079c
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Dec 10 23:59:26 2025 +0100
dev-python/pyxem: add pypi upstream metadata
Signed-off-by: Ivan S. Titov <iohann.s.titov@gmail.com>
commit 75d55441dbb2e55a7102e44b643e2e17cdfbc05d
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Fri Oct 17 21:58:20 2025 +0200
finally upd year to 2025 :)
commit 2c649067a608209dc9cb87ba1d818c9c2561a3d2
Author: VasilyLebedev <lebedevv@tcd.ie>
Date: Sun Sep 21 18:54:35 2025 +0100
pyxem
commit b451ac3b81ed540a5ce0bbef96d542cd2a2a0dcd
Author: istitov <istitov@github>
Date: Mon Feb 12 10:45:30 2024 +0100
upd copyright to 2024
commit c3608abdca73662012b2024eddc0ab62f856ff05
Author: istitov <istitov@github>
Date: Mon Feb 12 10:41:34 2024 +0100
sci-libs/scikit-image -> dev-python/scikit-image
commit 0b7fcf9639be3e82b30db7da1cc4785887b54326
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Sat Nov 25 04:52:49 2023 +0300
mass updated PYTHON_COMPAT for python:3
commit 48945780358f03a15149c157357fee6dafea2c53
Author: Ivan S. Titov <istitov@github.com>
Date: Thu Sep 14 23:32:55 2023 +0200
upd: header
commit 460457a9d445897ba12ad921a40bacde927de379
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:16:33 2023 +0100
Add files via upload
commit 465b72a5a42168d7d3bce20b8086f0e0b6503eab
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:16:07 2023 +0100
Delete pyxem-0.13.2.ebuild
commit 4563b4cae323ed9661c5f7b72014e27710c1cfbb
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:14:07 2023 +0100
Delete pyxem-0.12.1.ebuild
commit 3087a099a9175f39352c4d67c20c0b9f9faab3e6
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Jun 13 12:13:59 2023 +0100
Delete pyxem-0.11.0.ebuild
commit 47d8522b92a08c6852185fb9d0c81bbabf1e1305
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Tue Apr 11 23:48:44 2023 +0100
Add files via upload
commit d786509ba8df71e12952938f6351402ec7ecfbc7
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Wed Jul 20 23:16:50 2022 +0300
upd date in ebuilds
commit db4488aba24a44e493d596496530c691819c86be
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Sat Apr 23 17:33:32 2022 +0100
pyxem version bump
commit a55d739e421a9474314d166363781cc583673caf
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Thu Jun 3 01:22:39 2021 +0100
pyxem
commit 5ae9c641546f61cf4e7bc8f7f6df07df270d69c7
Author: Ivan S. Titov <iohann.s.titov@gmail.com>
Date: Thu Jan 28 19:25:41 2021 +0100
corrected gentoo header
commit 093333fd78af13ce9441a2999977ae583bfb81b5
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Sun Nov 15 19:09:44 2020 +0000
dev-python/pyxem corrected
commit eebd027b75f6869eceb06f8fa1fd67b76ce2ab7b
Author: VasilyLebedev <vasily.lebedev@ul.ie>
Date: Fri Aug 28 00:38:16 2020 +0000
py3_6 dropped for pyxem
commit 986bb2b37de88d6bc0b10dcd7a0c24480b08ffe0
Author: LebedevV <vasya_lebedev@mail.ru>
Date: Sat Jul 18 18:30:51 2020 +0000
pyxem with deps added
repomaned with deps

