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dev-python/ngs-toolkit

A toolkit for NGS analysis with Python.

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  • ngs-toolkit-0.25.1
    ~amd64 ~x86
    docs single_cell testing python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 python_targets_python3_14

    View      Download      Browse     License: GPL-3   
    Overlay: pypi

Runtime Dependencies

ngs-toolkit-0.25.1





>=dev-python/setuptools-scm-3.3.3[python_targets_python3_11
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,python_targets_python3_12
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,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/numpy-1.15.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/scipy-1.0.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/fastcluster[python_targets_python3_11
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,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/pandas-0.25.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/matplotlib[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/seaborn-0.10.0[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
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?
]




dev-python/parmap[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/pysam[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/pybedtools[python_targets_python3_11
      (-)
?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/scikit-learn-0.19.1[python_targets_python3_11
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?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




>=dev-python/statsmodels-0.8.0[python_targets_python3_11
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?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
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?
]




>=dev-python/patsy-0.4.1[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
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?
]




>=dev-python/tqdm-4.19.5[python_targets_python3_11
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?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
      (-)
?
]




dev-python/peppy[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/divvy[python_targets_python3_11
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?
,python_targets_python3_12
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?
,python_targets_python3_13
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?
,python_targets_python3_14
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?
]




dev-python/attmap[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
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?
]




>=dev-python/requests-2.21.0[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
      (-)
?
]




>=dev-python/jinja2-2.10.1[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
      (-)
?
]




>=dev-python/natsort-6.0.0[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
      (-)
?
]




>=dev-python/joblib-0.12.5[python_targets_python3_11
      (-)
?
,python_targets_python3_12
      (-)
?
,python_targets_python3_13
      (-)
?
,python_targets_python3_14
      (-)
?
]

docs?
      ( dev-python/sphinx[python_targets_python3_11
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      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

docs?
      ( dev-python/sphinx-rtd-theme[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

docs?
      ( dev-python/sphinx-issues[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

docs?
      ( dev-python/sphinx-argparse[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/scanpy[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/scanorama[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/phate[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/scvelo[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/loompy[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/fbpca[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/MulticoreTSNE[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/python-igraph[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/louvain[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/leidenalg[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

single_cell?
      ( dev-python/fa2[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( >=dev-python/pytest-4.4.0[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( >=dev-python/coverage-4.5.2[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( dev-python/pytest-cov[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( dev-python/codecov[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( dev-python/codacy-coverage[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( dev-python/pytest-xdist[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

testing?
      ( >=dev-python/rpy2-3.2.0[python_targets_python3_11
            (-)
      ?
,python_targets_python3_12
            (-)
      ?
,python_targets_python3_13
            (-)
      ?
,python_targets_python3_14
            (-)
      ?
] )

python_targets_python3_11?
      ( dev-lang/python:3.11 )

python_targets_python3_12?
      ( dev-lang/python:3.12 )

python_targets_python3_13?
      ( dev-lang/python:3.13 )

python_targets_python3_14?
      ( dev-lang/python:3.14 )