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sci-chemistry/autodock
A suite of automated docking tools
sci-biology/velvet
A sequence assembler for very short reads
sci-mathematics/normaliz
Tool for computations in affine monoids and more
sci-biology/fasttree
Fast inference of approximately-maximum-likelihood phylogenetic trees
sci-biology/abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
media-gfx/mypaint
Fast and easy graphics application for digital painters
media-gfx/tachyon
A portable, high performance parallel ray tracing system
media-gfx/luminance-hdr
Graphical user interface that provides a workflow for HDR imaging
media-gfx/gmic
GREYC's Magic Image Converter
media-libs/libraw
LibRaw is a library for reading RAW files obtained from digital photo cameras
dev-libs/libdivsufsort
Suffix-sorting library (for BWT)
dev-lang/ispc
Intel SPMD Program Compiler
sci-libs/coinor-csdp
COIN-OR C Library for Semi-Definite Programming
sci-libs/nfft
library for nonequispaced discrete Fourier transformations
sci-libs/openblas
Optimized BLAS library based on GotoBLAS2
dev-libs/starpu
Unified runtime system for heterogeneous multicore architectures
dev-php/pecl-imagick
PHP wrapper for the ImageMagick library
dev-util/mdds
Collection of multi-dimensional data structure and indexing algorithm
media-gfx/darktable
A virtual lighttable and darkroom for photographers
sci-biology/cd-hit
Clustering Database at High Identity with Tolerance
sci-electronics/ngspice
The Next Generation Spice (Electronic Circuit Simulator)
sci-libs/colpack
C++ algorithms for specialized vertex coloring problems
sci-libs/flann
Fast approximate nearest neighbor searches in high dimensional spaces
sci-libs/hypre
Parallel matrix preconditioners library
sci-libs/lis
Library of Iterative Solvers for Linear Systems
virtual/fortran
Virtual for Fortran Compiler
sci-libs/suitesparseconfig
Common configurations for all packages in suitesparse
sci-mathematics/gmp-ecm
Elliptic Curve Method for Integer Factorization
sci-libs/ceres-solver
Nonlinear least-squares minimizer
dev-python/graph-tool
An efficient python module for manipulation and statistical analysis of graphs
media-gfx/pngquant
Command-line utility and library for lossy compression of PNG images
sci-physics/lammps
Large-scale Atomic/Molecular Massively Parallel Simulator
dev-python/numba
NumPy aware dynamic Python compiler using LLVM
sci-physics/xrayutilities
package with useful scripts for X-ray diffraction physicists
games-fps/gzdoom
A modder-friendly OpenGL source port based on the DOOM engine
app-antivirus/malheur
Malware analysis tool
media-libs/opensubdiv
An Open-Source subdivision surface library
media-libs/vidstab
Video stabilization library
sci-libs/libsc
Support for parallel scientific applications
sci-libs/o2scl
Object-oriented Scientific Computing Library
sci-libs/p4est
Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees
sci-libs/superlu_mt
Multithreaded sparse LU factorization library
sci-libs/symengine
Fast symbolic manipulation library, written in C++
media-libs/libmypaint
Library for making brushstrokes
sys-devel/clang-runtime
Meta-ebuild for clang runtime libraries
sci-libs/sundials
Suite of nonlinear solvers
media-gfx/solvespace
Parametric 2d/3d CAD
dev-lang/gnat-gpl
GNAT Ada Compiler - GPL version
sci-libs/dmlc-core
Common bricks library for building distributed machine learning
media-gfx/libimagequant
Palette quantization library that powers pngquant and other PNG optimizers