# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="a toolkit for processing single cell Hi-C data"

HOMEPAGE=""
LICENSE=""
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE=""
DEPENDENCIES="dev-python/numpy[${PYTHON_USEDEP}]
	<dev-python/pandas-2.0[${PYTHON_USEDEP}]
	dev-python/cython[${PYTHON_USEDEP}]
	dev-python/cmake[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/pairtools[${PYTHON_USEDEP}]
	dev-python/bioframe[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/cached-property[${PYTHON_USEDEP}]
	>=dev-python/chart-studio-1.1.0[${PYTHON_USEDEP}]
	dev-python/cleanlab[${PYTHON_USEDEP}]
	>=dev-python/click-8.1.6[${PYTHON_USEDEP}]
	>=dev-python/cloudpickle-2.2.1[${PYTHON_USEDEP}]
	dev-python/cooler[${PYTHON_USEDEP}]
	>=dev-python/h5py-3.7.0[${PYTHON_USEDEP}]
	dev-python/igraph[${PYTHON_USEDEP}]
	dev-python/leidenalg[${PYTHON_USEDEP}]
	>=dev-python/levenshtein-0.21.1[${PYTHON_USEDEP}]
	>=dev-python/markdown-it-py-3.0.0[${PYTHON_USEDEP}]
	>=dev-python/markupsafe-2.1.3[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-3.5.3[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.7.0[${PYTHON_USEDEP}]
	>=dev-python/pandas-1.3.4[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/bioframe[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/cooltools[${PYTHON_USEDEP}]
	dev-python/pyBigWig[${PYTHON_USEDEP}]
	>=dev-python/pyyaml-6.0.1[${PYTHON_USEDEP}]
	>=dev-python/scikit-learn-1.1.2[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.9.3[${PYTHON_USEDEP}]
	>=dev-python/seaborn-0.12.2[${PYTHON_USEDEP}]
	dev-python/tornado[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.65.0[${PYTHON_USEDEP}]
	dev-python/umap-learn[${PYTHON_USEDEP}]
	dev-python/HiCMatrix[${PYTHON_USEDEP}]
	>=dev-python/unidecode-1.3.6[${PYTHON_USEDEP}]
	dev-python/krbalancing[${PYTHON_USEDEP}]
	dev-python/scanpy[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"