# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Molecular signaling prior knowledge processing"

HOMEPAGE="https://omnipathdb.org/"
LICENSE="GPL-3"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME//-/_}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME//-/_}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="graph metabo pathophenodb"
DEPENDENCIES="dev-python/beautifulsoup4[${PYTHON_USEDEP}]
	dev-python/dill[${PYTHON_USEDEP}]
	dev-python/future[${PYTHON_USEDEP}]
	dev-python/glom[${PYTHON_USEDEP}]
	dev-python/lxml[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/openpyxl[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev-python/pycurl[${PYTHON_USEDEP}]
	dev-python/pypath-common[${PYTHON_USEDEP}]
	dev-python/pyreadr[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/rdata[${PYTHON_USEDEP}]
	dev-python/requests[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.9.0[${PYTHON_USEDEP}]
	dev-python/sqlparse[${PYTHON_USEDEP}]
	dev-python/tabulate[${PYTHON_USEDEP}]
	dev-python/timeloop[${PYTHON_USEDEP}]
	dev-python/toml[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/xlrd[${PYTHON_USEDEP}]
	graph? ( dev-python/python-igraph[${PYTHON_USEDEP}] )
	pathophenodb? ( dev-python/SPARQLWrapper[${PYTHON_USEDEP}] )
	metabo? ( dev-python/openbabel[${PYTHON_USEDEP}] )
	metabo? ( dev-python/rdkit[${PYTHON_USEDEP}] )
	metabo? ( dev-python/epam-indigo[${PYTHON_USEDEP}] )
	dev-python/pysftp[${PYTHON_USEDEP}]
	dev-python/typing-extensions[${PYTHON_USEDEP}]
	>=dev-python/tornado-3.6.6[${PYTHON_USEDEP}]
	>=dev-python/cryptography-41.0.4[${PYTHON_USEDEP}]
	>=dev-python/certifi-2023.7.22[${PYTHON_USEDEP}]
	<dev-python/cffi-2.0.0[${PYTHON_USEDEP}]"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"