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sci-chemistry/coot

Crystallographic Object-Oriented Toolkit for model building, completion and validation

Screenshots

  • coot-9999
    +openmp static-libs test python_targets_python2_7 python_single_target_python2_7

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    Overlay: science (layman)
  • coot-0.7.2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_7 python_single_target_python2_7

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    Overlay: funtoo (distro)
  • coot-0.7.2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_7 python_single_target_python2_7

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    Overlay: gentoo (distro)
  • coot-0.7.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_7 python_single_target_python2_7

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    Overlay: funtoo (distro)
  • coot-0.7.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_7 python_single_target_python2_7

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    Overlay: gentoo (distro)
  • coot-0.7
    amd64 x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: gentoo (distro)
  • coot-0.7
    amd64 x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: funtoo (distro)

ChangeLog

# ChangeLog for sci-chemistry/coot
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.65 2014/10/12 11:33:45 jlec Exp $

12 Oct 2014; Justin Lecher <jlec@gentoo.org> coot-0.7.ebuild,
coot-0.7.1-r1.ebuild, coot-0.7.2.ebuild:
Fix Slot of mmdb dep

17 Sep 2014; Justin Lecher <jlec@gentoo.org> coot-0.7.2.ebuild:
Drop py2.6 support; fix shebang fixing problems

*coot-0.7.2 (19 Sep 2013)

19 Sep 2013; Justin Lecher <jlec@gentoo.org> +coot-0.7.2.ebuild:
Version Bump

18 Sep 2013; Justin Lecher <jlec@gentoo.org> coot-0.7.ebuild,
coot-0.7.1-r1.ebuild:
Drop unneccessary shebang magic, #484972

18 Sep 2013; Justin Lecher <jlec@gentoo.org> -coot-0.6.2.ebuild,
-coot-0.6.2-r1.ebuild:
Drop old

15 Sep 2013; Agostino Sarubbo <ago@gentoo.org> coot-0.7.ebuild:
Stable for x86, wrt bug #477166

15 Sep 2013; Agostino Sarubbo <ago@gentoo.org> coot-0.7.ebuild:
Stable for amd64, wrt bug #477166

*coot-0.7.1-r1 (28 Aug 2013)

28 Aug 2013; Justin Lecher <jlec@gentoo.org> -coot-0.7.1.ebuild,
+coot-0.7.1-r1.ebuild:
Install missing syminfo, #482734

27 Aug 2013; Justin Lecher <jlec@gentoo.org> coot-0.7.1.ebuild:
Reenable test

*coot-0.7.1 (26 Aug 2013)

26 Aug 2013; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild,
coot-0.6.2-r1.ebuild, coot-0.7.ebuild, +coot-0.7.1.ebuild:
Version BUmp, #482278; bump to new python-r1 eclasses

29 May 2013; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild,
coot-0.6.2-r1.ebuild, coot-0.7.ebuild, metadata.xml:
Drop version restriction from clipper dep

*coot-0.7 (06 Oct 2012)

06 Oct 2012; Justin Lecher <jlec@gentoo.org> -coot-0.7_pre4040.ebuild,
-coot-0.7_pre4266.ebuild, +coot-0.7.ebuild,
+files/coot-0.7-clipper-config.patch, +files/coot-0.7-goocanvas.patch,
+files/coot-0.7-mmdb-config.patch, +files/coot-0.7-ssm.patch,
-files/coot-0.7_pre4040-clipper-config.patch,
-files/coot-0.7_pre4040-gl.patch, -files/coot-0.7_pre4040-goocanvas.patch,
-files/coot-0.7_pre4040-libpng-1.5.patch,
-files/coot-0.7_pre4040-mmdb-config.patch, -files/coot-0.7_pre4040-ssm.patch,
-files/coot-0.7_pre4040-test.patch,
-files/coot-0.7_pre4266-clipper-config.patch,
-files/coot-0.7_pre4266-goocanvas.patch,
-files/coot-0.7_pre4266-mmdb-config.patch, -files/coot-0.7_pre4266-ssm.patch:
Version Bump, #437304; drop prereleases

*coot-0.7_pre4266 (11 Jul 2012)

11 Jul 2012; Justin Lecher <jlec@gentoo.org> +coot-0.7_pre4266.ebuild,
+files/coot-0.7_pre4266-clipper-config.patch,
+files/coot-0.7_pre4266-goocanvas.patch,
+files/coot-0.7_pre4266-mmdb-config.patch, +files/coot-0.7_pre4266-ssm.patch:
Version Bump, fixes compilation with gcc-4.7, #425836

07 Mar 2012; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild,
coot-0.6.2-r1.ebuild, coot-0.7_pre4040.ebuild:
Fix sandbox violation, #407311

*coot-0.7_pre4040 (06 Mar 2012)

06 Mar 2012; Justin Lecher <jlec@gentoo.org> coot-0.6.2-r1.ebuild,
+coot-0.7_pre4040.ebuild, +files/coot-0.7_pre4040-clipper-config.patch,
+files/coot-0.7_pre4040-gl.patch, +files/coot-0.7_pre4040-goocanvas.patch,
+files/coot-0.7_pre4040-libpng-1.5.patch,
+files/coot-0.7_pre4040-mmdb-config.patch, +files/coot-0.7_pre4040-ssm.patch,
+files/coot-0.7_pre4040-test.patch:
Adding pre release version from svn

23 Oct 2011; Samuli Suominen <ssuominen@gentoo.org>
-files/0.6.1-libpng14.patch, -coot-0.6.1.ebuild:
old

08 Oct 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> coot-0.6.2.ebuild:
x86 stable wrt bug #385759

08 Oct 2011; Samuli Suominen <ssuominen@gentoo.org> coot-0.6.2.ebuild:
amd64 stable wrt #385759

07 Oct 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.2-r1.ebuild:
Readded dropped flag-o-matic.eclass, found by ssuominen

*coot-0.6.2-r1 (07 Oct 2011)

07 Oct 2011; Justin Lecher <jlec@gentoo.org> +coot-0.6.2-r1.ebuild:
Moved to autotools-utils.eclass in order to have correct .a/la file handling,
#385865

06 Oct 2011; Samuli Suominen <ssuominen@gentoo.org> coot-0.6.2.ebuild:
Pass -Wl,--no-as-needed with USE="openmp" and <sys-devel/libtool-2.4-r2 wrt
#385813 by Agostino Sarubbo

14 Sep 2011; Samuli Suominen <ssuominen@gentoo.org>
+files/0.6.2-libpng15.patch, coot-0.6.2.ebuild:
Fix building with libpng15 wrt #378349 by Diego Elio Pettenò

16 Jul 2011; Justin Lecher <jlec@gentoo.org> +files/0.6.2-ssm.patch,
coot-0.6.2.ebuild:
Depend on unbundled ssm

29 Jun 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild:
Fix mmdb dep version

29 Jun 2011; Justin Lecher <jlec@gentoo.org> +files/0.6.2-test.patch,
coot-0.6.2.ebuild:
Fixed deps and test

28 Jun 2011; Justin Lecher <jlec@gentoo.org> -files/0.3.1-as-needed.patch,
-files/0.4_pre2-as-needed.patch,
-files/0.3.1-fix-compilation-with-guile-1.8.patch,
-files/0.3.1-link-against-guile-gtk-properly.patch,
-files/0.3.3-as-needed.patch,
-files/0.3.3-link-against-guile-gtk-properly.patch,
-files/0.4_pre2-link-against-guile-gtk-properly.patch,
-files/0.4_pre2-r549-fix-namespace-error.patch, -files/glib.m4,
-files/gtk.m4:
Cleaned unneeded patches

*coot-0.6.2 (28 Jun 2011)

28 Jun 2011; Justin Lecher <jlec@gentoo.org>
+files/0.6.2-clipper-config.patch, +files/0.6.2-gl.patch,
+files/0.6.2-mmdb-config.patch, coot-0.6.1.ebuild, +coot-0.6.2.ebuild,
metadata.xml:
Version Bump

02 Mar 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.1.ebuild:
Correct Slots for gtk 3 introduction to tree

02 Mar 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.1.ebuild:
Correct Slots for gtk 3 introduction to tree

31 Jan 2011; Justin Lecher <jlec@gentoo.org> -coot-0.6.ebuild:
Cleaned old

25 Jan 2011; Christian Faulhammer <fauli@gentoo.org> coot-0.6.1.ebuild:
stable x86, bug 352043

20 Jan 2011; Markos Chandras <hwoarang@gentoo.org> coot-0.6.1.ebuild:
Stable on amd64 wrt bug #352043

18 Jan 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.1.ebuild:
Fix for tests, #333845

12 Jan 2011; Justin Lecher <jlec@gentoo.org> coot-0.6.1.ebuild:
Added missing DEPEND on bc

24 Sep 2010; Justin Lecher <jlec@gentoo.org> coot-0.6.ebuild,
coot-0.6.1.ebuild:
Fixed guile-gtk version DEP

24 Sep 2010; Justin Lecher <jlec@gentoo.org> coot-0.6.1.ebuild:
Keyworded for ~-linux

16 Sep 2010; Tomáš Chvátal <scarabeus@gentoo.org> coot-0.6.ebuild,
coot-0.6.1.ebuild:
virtual/glut -> media-libs/glut

17 May 2010; Justin Lecher <jlec@gentoo.org> coot-0.6.ebuild,
coot-0.6.1.ebuild:
Fix for test, #318605; added missing deps on libidn & libpng

*coot-0.6.1 (17 May 2010)

17 May 2010; Justin Lecher <jlec@gentoo.org> +files/0.6.1-libpng14.patch,
+coot-0.6.1.ebuild:
Version Bump

22 Apr 2010; Justin Lecher <jlec@gentoo.org> coot-0.6.ebuild:
Fixes for Python ABIs

26 Feb 2010; Justin Lecher <jlec@gentoo.org> coot-0.6.ebuild:
Missing sci-libs/mmdb DEP added

*coot-0.6 (06 Feb 2010)

06 Feb 2010; Justin Lecher <jlec@gentoo.org> -coot-0.1.2.ebuild,
-coot-0.3.1.ebuild, -coot-0.3.3.ebuild, -coot-0.4_pre2-r549.ebuild,
+coot-0.6.ebuild, +files/glib.m4, +files/gtk.m4:
Version BUmp, removed broken versions

10 Oct 2009; Patrick Lauer <patrick@gentoo.org> coot-0.1.2.ebuild,
coot-0.3.1.ebuild, coot-0.3.3.ebuild, coot-0.4_pre2-r549.ebuild:
Fixing Homepage, half of #285068

17 Apr 2009; Sébastien Fabbro <bicatali@gentoo.org> coot-0.4_pre2-r549:
Fixed license, thanks jlec

11 Feb 2009; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.1.2.ebuild,
coot-0.3.1.ebuild, coot-0.3.3.ebuild:
(#258543) Remove duplicate python deps (walch.martin at web.de).

06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.

*coot-0.4_pre2-r549 (19 Dec 2007)

19 Dec 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.4_pre2-as-needed.patch,
+files/0.4_pre2-link-against-guile-gtk-properly.patch,
+files/0.4_pre2-r549-fix-namespace-error.patch,
+coot-0.4_pre2-r549.ebuild:
Bump to 0.4 prerelease, unkeyworded. Use a package.keywords entry with '**'
for the keyword to install.

*coot-0.3.3 (16 Aug 2007)

16 Aug 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.3-as-needed.patch,
+files/0.3.3-link-against-guile-gtk-properly.patch, +coot-0.3.3.ebuild:
Bump. Reads CNS maps, handles anisotropy better, other bugfixes and features.

22 Jun 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.1-link-against-guile-gtk-properly.patch,
+files/0.3.1-fix-compilation-with-guile-1.8.patch, coot-0.3.1.ebuild:
Add USE=new-interface to prefer gtk2, which is still experimental. Add
patches to make it work with guile 1.8 and link against guile-gtk properly.
Change src_install() make to emake -j1 so other MAKEOPTS get through.

30 May 2007; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.3.1.ebuild:
Keyword ~ppc.

29 May 2007; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.3.1.ebuild:
Require >=x11-libs/gtk-canvas-0.1.1-r2 for --as-needed linker flag.

*coot-0.3.1 (29 May 2007)

29 May 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.1-as-needed.patch, +coot-0.3.1.ebuild:
Bump to latest version. Now uses external, slotted sci-libs/clipper instead
of the one in ccp4, because it needs newer versions than those contained in
ccp4.

15 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> coot-0.1.2.ebuild:
QA: Removed illegal use of $. Bug #168043

06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -coot-0.1.2_pre1.ebuild:
QA: Removed unused versions.

26 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.1.2.ebuild:
Stable on x86/ppc.

20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
(#148281) Change herd to sci-chemistry from sci.

*coot-0.1.2 (06 Sep 2006)

06 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; +coot-0.1.2.ebuild:
Bump.

05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Remove myself as maintainer, anyone feel free to work on this, although I'll
continue to do so as well.

07 Jul 2006; Donnie Berkholz <spyderous@gentoo.org>; metadata.xml:
Update to my new email address.

28 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>;
coot-0.1.2_pre1.ebuild:
Add missing dep on x11-libs/gtkglext.

*coot-0.1.2_pre1 (16 Jun 2006)

16 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
+coot-0.1.2_pre1.ebuild:
Add the Crystallographic Object-Oriented Toolkit for model building,
completion and validation.