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sci-chemistry/coot

Crystallographic Object-Oriented Toolkit for model building, completion and validation

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  • coot-9999
    +openmp static-libs test python_targets_python2_6 python_targets_python2_7 python_single_target_python2_6 python_single_target_python2_7

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    Overlay: science (layman)
  • coot-0.7_pre4266
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: axs (layman)
  • coot-0.7_pre4040
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: axs (layman)
  • coot-0.7.2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_6 python_targets_python2_7 python_single_target_python2_6 python_single_target_python2_7

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    Overlay: gentoo (distro)
  • coot-0.7.2
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_6 python_targets_python2_7 python_single_target_python2_6 python_single_target_python2_7

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    Overlay: funtoo (distro)
  • coot-0.7.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_6 python_targets_python2_7 python_single_target_python2_6 python_single_target_python2_7

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    Overlay: gentoo (distro)
  • coot-0.7.1-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test python_targets_python2_6 python_targets_python2_7 python_single_target_python2_6 python_single_target_python2_7

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    Overlay: funtoo (distro)
  • coot-0.7
    amd64 x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: funtoo (distro)
  • coot-0.7
    amd64 x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: gentoo (distro)
  • coot-0.6.2-r1
    ~amd64 ~x86 ~amd64-linux ~x86-linux
    +openmp static-libs test

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    Overlay: axs (layman)
  • coot-0.6.2
    amd64 x86 ~amd64-linux ~x86-linux
    +openmp test

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    Overlay: axs (layman)

ChangeLog

# ChangeLog for sci-chemistry/coot
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $

25 Nov 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Update patch for current HEAD

02 Oct 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Update patch for HEAD

21 Sep 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Adjust pc patch for latest head

19 Sep 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Clean for latest HEAD

28 Aug 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Install missing syminfo, #482734

27 Aug 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Fix pc patch

22 Jul 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Don't use relative path

11 Jul 2013; Justin Lecher <jlec@gentoo.org> files/9999-pc.patch:
Update pc patch

02 Jun 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild,
-files/9999-clipper-config.patch, -files/9999-goocanvas.patch,
-files/9999-mmdb-config.patch, +files/9999-pc.patch, -files/9999-ssm.patch:
Update pc patches

02 Jun 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Fix PYTHON() -> $ for new eclasses

29 May 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Move to new python eclasses

29 May 2013; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild, metadata.xml:
Drop version from clipper

03 Jul 2012; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild,
-files/coot-9999-gcc47.patch:
Gcc-4.7 support included upstream

14 Jun 2012; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild,
+files/coot-9999-gcc47.patch:
Fix for gcc-4.7

25 Apr 2012; Justin Lecher <jlec@gentoo.org> -files/9999-libpng-1.5.patch,
coot-9999.ebuild:
Drop libpng-1.5 patch, included upstream

25 Apr 2012; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Add fix for >glib-2.32

16 Mar 2012; Justin Lecher <jlec@gentoo.org> -files/9999-gl.patch,
-files/9999-test.patch, coot-9999.ebuild:
Drop gl and test patch -> included upstream

27 Feb 2012; Justin Lecher <jlec@gentoo.org> -files/9999-include.patch,
-files/9999-lidia.patch, coot-9999.ebuild:
Cleaned old patches, added goocanvas config option

25 Feb 2012; Justin Lecher <jlec@gentoo.org> -files/9999-include.patch,
-files/9999-lidia.patch, coot-9999.ebuild:
Cleaned old patches, added goocanvas config option

14 Jan 2012; Justin Lecher <jlec@gentoo.org> -Manifest, -Manifest:
Dropped Manifest

14 Jan 2012; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Call python_pkg_setup always

09 Jan 2012; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Bumped EAPI to 4 and added new eautoreconf handling of autotools-utils.eclass

07 Oct 2011; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Added dep on >=sys-devel/libtool-2.4-r2

07 Oct 2011; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Moved to autotools-utils.eclass in order to have correct .a/la file handling,
#385865; added png15 patch

06 Oct 2011; Justin Lecher <jlec@gentoo.org> +files/9999-libpng-1.5.patch,
coot-9999.ebuild:
Add png15 support and don't build static libs

16 Jul 2011; Justin Lecher <jlec@gentoo.org> +files/9999-ssm.patch,
coot-9999.ebuild:
Adopt to unbundled ssm

15 Jul 2011; Justin Lecher <jlec@gentoo.org> files/9999-mmdb-config.patch:
Mmdb fix

29 Jun 2011; Justin Lecher <jlec@gentoo.org>
+files/9999-clipper-config.patch, +files/9999-mmdb-config.patch,
coot-9999.ebuild, +files/9999-test.patch, metadata.xml:
Imported changes from tree

15 Jun 2011; Justin Lecher <jlec@gentoo.org> -files/9999-align.patch,
coot-9999.ebuild:
Updated to current HEAD

02 Jun 2011; Justin Lecher <jlec@gentoo.org> +files/9999-align.patch,
coot-9999.ebuild:
Fixes for latest HEAD

28 May 2011; Justin Lecher <jlec@gentoo.org> -files/9999-clipper.patch,
files/9999-lidia.patch, coot-9999.ebuild:
Cleaned for current HEAD

02 May 2011; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Fix x11-libs/goocanvas SLOT

28 Apr 2011; Justin Lecher <jlec@gentoo.org> +files/9999-gl.patch,
files/9999-lidia.patch, coot-9999.ebuild:
Fixed underlinking problems

28 Apr 2011; Justin Lecher <jlec@gentoo.org> -files/9999-gsl.patch,
-files/9999-openmp.patch, -files/9999-rappermc.patch,
-files/fix-namespace-error.patch, -files/glib.m4, -files/gtk.m4:
Cleaned old patches

07 Mar 2011; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Correct Slots for gtk 3 introduction to tree

03 Mar 2011; Justin Lecher <jlec@gentoo.org> files/9999-lidia.patch,
coot-9999.ebuild:
Coot live fixes

20 Jan 2011; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Fix tests

12 Jan 2011; Justin Lecher <jlec@gentoo.org> +files/9999-clipper.patch,
+files/9999-gsl.patch, +files/9999-lidia.patch, files/9999-goocanvas.patch,
files/9999-openmp.patch, coot-9999.ebuild:
Correctly manage openmp and otehr linking

17 Dec 2010; Justin Lecher <jlec@gentoo.org> files/9999-openmp.patch,
coot-9999.ebuild:
Correct handling of OpenMp support

19 Nov 2010; Justin Lecher <jlec@gentoo.org> +files/9999-goocanvas.patch,
coot-9999.ebuild:
Better goocanvas detection

19 Nov 2010; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Added x11-libs/goocanvas as DEPS

10 Nov 2010; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
Fix DEP on x11-libs/guile-gtk

24 Oct 2010; Justin Lecher <jlec@gentoo.org> +files/9999-include.patch,
coot-9999.ebuild, files/9999-openmp.patch:
Real OPENMP fix

20 Sep 2010; Justin Lecher <jlec@gentoo.org> +files/9999-openmp.patch,
coot-9999.ebuild:
Openmp linking fix

19 Sep 2010; Justin Lecher <jlec@gentoo.org> coot-9999.ebuild:
virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl
Correction

*coot-0.6.1 (30 Jan 2010)

30 Jan 2010; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-0.6.ebuild,
+coot-0.6.1.ebuild, coot-9999.ebuild, +files/fix-namespace-error.patch,
+files/glib.m4, +files/gtk.m4:
Version bump

14 Dec 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-files/0.5.2-as-needed.patch, -files/0.6_pre1-gcc4.4.patch,
-files/9999-as-needed.patch, -files/9999-test-rama.patch,
-files/0.5.2-gcc-4.3.patch, coot-9999.ebuild,
-files/0.6_pre1-test-rama.patch, -files/9999-as-needed2.patch,
-files/0.5.2-gcc-4.4.patch, -files/0.6_pre1-as-needed.patch,
-files/9999-check-include.patch, -files/9999-gcc4.4.patch,
-files/fix-namespace-error.patch, -files/glib.m4, -files/gtk.m4,
-files/gtkgl.m4, -files/imlib.m4,
-files/link-against-guile-gtk-properly.patch:
fixes for upcoming release in coot-9999
Cleaned up patches

12 Dec 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-9999.ebuild:
reduce number of macros which we patch
added libidn as dep

*coot-0.6 (04 Dec 2009)

04 Dec 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-coot-0.6_pre1-r2312.ebuild, -coot-0.6_pre1-r2327.ebuild,
+coot-0.6.ebuild:
Version bump to 0.6
Removed pre versions

13 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-9999.ebuild:
removed dev-scheme/goosh dep since r2487

*coot-0.6_pre1-r2327 (03 Nov 2009)

03 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+coot-0.6_pre1-r2327.ebuild:
bumped to finks latested released

05 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-0.5.2.ebuild,
coot-9999.ebuild:
econf dies itself

03 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> ChangeLog:
as-needed patch not needed anymore
fixes for reduce not needed anymore
rappermc fix included

20 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-9999.ebuild:
upstream fixes COOT_TEST_DATA_DIR and included our patch for tests

*coot-0.6_pre1-r2312 (16 Sep 2009)

16 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
files/0.6_pre1-as-needed.patch, -coot-0.6_pre1-r2042.ebuild,
files/0.6_pre1-gcc4.4.patch, +coot-0.6_pre1-r2312.ebuild,
+files/0.6_pre1-test-rama.patch, coot-0.5.2.ebuild, coot-9999.ebuild:
HOMEPAGE corrected bug 285068
bumped prerelease to r2312 which will be the version of the second
prerelease
Included src_test in prerelease

13 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
files/9999-test-rama.patch, coot-9999.ebuild:
src_test is working now (rev. 2296)

11 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+files/9999-test-rama.patch, coot-9999.ebuild:
added patch to correct rama-data dir location for src_test

10 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
files/9999-as-needed.patch, coot-9999.ebuild:
src_test is functional now in 9999
Some rewritting

04 Sep 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-files/9999-check.patch, coot-9999.ebuild:
Upstream fixed the check maketarget

31 Aug 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+files/9999-check.patch, coot-9999.ebuild,
+files/9999-check-include.patch:
prelimrary support of src_test added

11 Aug 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-9999.ebuild:
gcc 4.4 compatibily fixed upstream

05 Aug 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-coot-0.6_pre1-r2041.ebuild, coot-0.6_pre1-r2042.ebuild,
+files/0.5.2-gcc-4.4.patch, +files/0.6_pre1-gcc4.4.patch,
coot-9999.ebuild, +files/9999-gcc4.4.patch, coot-0.5.2.ebuild:
fixes for gcc4.4 and glibc-2.10

*coot-9999 (08 Jun 2009)

08 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+files/9999-as-needed.patch, +coot-9999.ebuild:
added live ebuild

*coot-0.6_pre1-r2042 (05 Jun 2009)

05 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+coot-0.6_pre1-r2042.ebuild:
version including numerous QA fixes

*coot-0.6_pre1-r2041 (04 Jun 2009)

04 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-coot-0.6_pre1-r2026.ebuild, -coot-0.6_pre1-r2037.ebuild,
+coot-0.6_pre1-r2041.ebuild, -files/0.6_pre1-gcc-4.3.patch,
-files/0.6_pre1-gtk.patch:
Included our patches in upstream
Clean up old versions

*coot-0.6_pre1-r2037 (03 Jun 2009)
*coot-0.6_pre1-r2026 (03 Jun 2009)

03 Jun 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+files/0.6_pre1-as-needed.patch, +coot-0.6_pre1-r2037.ebuild,
+files/0.6_pre1-gtk.patch, +coot-0.6_pre1-r2026.ebuild,
+files/0.6_pre1-gcc-4.3.patch:
Added prerelease

17 Apr 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-0.5.2.ebuild:
fixed the license
correct one is GPL-3 since 0.4-pre1

*coot-0.5.2 (19 Feb 2009)

11 Feb 2009; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.1.2.ebuild,
coot-0.3.1.ebuild, coot-0.3.3.ebuild:
(#258543) Remove duplicate python deps (walch.martin at web.de).

06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.

*coot-0.4_pre2-r549 (19 Dec 2007)

19 Dec 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.4_pre2-as-needed.patch,
+files/0.4_pre2-link-against-guile-gtk-properly.patch,
+files/0.4_pre2-r549-fix-namespace-error.patch,
+coot-0.4_pre2-r549.ebuild:
Bump to 0.4 prerelease, unkeyworded. Use a package.keywords entry with '**'
for the keyword to install.

*coot-0.3.3 (16 Aug 2007)

16 Aug 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.3-as-needed.patch,
+files/0.3.3-link-against-guile-gtk-properly.patch, +coot-0.3.3.ebuild:
Bump. Reads CNS maps, handles anisotropy better, other bugfixes and features.

22 Jun 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.1-link-against-guile-gtk-properly.patch,
+files/0.3.1-fix-compilation-with-guile-1.8.patch, coot-0.3.1.ebuild:
Add USE=new-interface to prefer gtk2, which is still experimental. Add
patches to make it work with guile 1.8 and link against guile-gtk properly.
Change src_install() make to emake -j1 so other MAKEOPTS get through.

30 May 2007; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.3.1.ebuild:
Keyword ~ppc.

29 May 2007; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.3.1.ebuild:
Require >=x11-libs/gtk-canvas-0.1.1-r2 for --as-needed linker flag.

*coot-0.3.1 (29 May 2007)

29 May 2007; Donnie Berkholz <dberkholz@gentoo.org>;
+files/0.3.1-as-needed.patch, +coot-0.3.1.ebuild:
Bump to latest version. Now uses external, slotted sci-libs/clipper instead
of the one in ccp4, because it needs newer versions than those contained in
ccp4.

15 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> coot-0.1.2.ebuild:
QA: Removed illegal use of $. Bug #168043

06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -coot-0.1.2_pre1.ebuild:
QA: Removed unused versions.

26 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; coot-0.1.2.ebuild:
Stable on x86/ppc.

20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
(#148281) Change herd to sci-chemistry from sci.

*coot-0.1.2 (06 Sep 2006)

06 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; +coot-0.1.2.ebuild:
Bump.

05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
Remove myself as maintainer, anyone feel free to work on this, although I'll
continue to do so as well.

07 Jul 2006; Donnie Berkholz <spyderous@gentoo.org>; metadata.xml:
Update to my new email address.

28 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>;
coot-0.1.2_pre1.ebuild:
Add missing dep on x11-libs/gtkglext.

*coot-0.1.2_pre1 (16 Jun 2006)

16 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
+coot-0.1.2_pre1.ebuild:
Add the Crystallographic Object-Oriented Toolkit for model building,
completion and validation.