gpo.zugaina.org

Search Portage & Overlays:

sci-biology/sra_sdk

NCBI Sequence Read Archive (SRA) sratoolkit

Screenshots

  • sra_sdk-2.2.2a
    ~amd64 ~x86
    static

    View      Download      Browse     License: public-domain   
    Overlay: science (layman)
  • sra_sdk-2.1.9
    ~amd64 ~x86
    static

    View      Download      Browse     License: public-domain   
    Overlay: science (layman)
  • sra_sdk-2.1.6
    ~amd64 ~x86
    static

    View      Download      Browse     License: public-domain   
    Overlay: science (layman)

ChangeLog

# ChangeLog for sci-biology/sra_sdk
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $

03 Mar 2013; Justin Lecher <jlec@gentoo.org> sra_sdk-2.1.9.ebuild,
sra_sdk-2.2.2a.ebuild, metadata.xml:
Drop useless blank line

*sra_sdk-2.2.2a (28 Dec 2012)

28 Dec 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+sra_sdk-2.2.2a.ebuild:
sci-biology/sra_sdk-2.2.2a: a version bump, still requires MAKEOPTS=-j1 and
copies softlinks to binaries and libraries as files, so everything is in 3
physical copies

15 Mar 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.9.ebuild:
added missing insinto sra_sdk-2.1.9.ebuild

15 Mar 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.9.ebuild:
use EAPI=4 hoping it will handle symlinks in bin/ and lib/ directories
properly (but it does not, bug #408199 sra_sdk-2.1.9.ebuild

*sra_sdk-2.1.6 (17 Feb 2012)

17 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+sra_sdk-2.1.6.ebuild, sra_sdk-2.1.9.ebuild:
sci-biology/sra_sdk: updated ebuild for 2.1.6 and 2.1.9: they both
compile/install but possibly install layout is still broken, leading to non-
functional sff-dump

06 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.9.ebuild:
preserve libs written directly into at the end of src_compile() and install
them later on sra_sdk-2.1.9.ebuild

06 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.9.ebuild, +files/libs_sra_Makefile.patch,
+files/tools_vdb-vcopy_Makefile.patch:
two more Makefiles needed a DESTDIR patch, in conjunction with an ugly
symlink hack in one can build the stuff; dobin does not transfer symliks so
every binary appears installed 3 times; upstream bug
http://jira.be-md.ncbi.nlm.nih.gov/browse/TR-10207

*sra_sdk-2.1.9 (06 Feb 2012)

06 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.6.ebuild, +sra_sdk-2.1.9.ebuild, +files/sra_sdk-destdir.patch:
version bump and almost correct DESTDIR patch

22 Sep 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.1.6.ebuild:
adjust to altered source tree strcuture, add weird ncbi/ subdirs to be
installed, more comments in the ebuild

*sra_sdk-2.1.6 (22 Sep 2011)

22 Sep 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
-sra_sdk-2.0.1.ebuild, +sra_sdk-2.1.6.ebuild:
version bump sra_sdk-2.1.6.ebuild

30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
sra_sdk-2.0.1.ebuild:
backbone of a new package, should probably use a lot of stuff from
ncbi-tools++ ebuild