sci-biology/ncbi-tools++
NCBI C++ Toolkit, including NCBI BLAST+
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ncbi-tools++-9.0.0berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X
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ChangeLog
# ChangeLog for sci-biology/ncbi-tools++
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.28 2013/03/11 16:16:48 jlec Exp $
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
28 Feb 2013; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2010.06.15-r1.ebuild, metadata.xml:
Drop old
05 Nov 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-0.2010.06.15-r1.ebuild:
Correct patch naming again
03 Nov 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-0.2010.06.15-r1.ebuild:
Correct for new version number
*ncbi-tools++-0.2010.06.15-r1 (02 Nov 2012)
02 Nov 2012; Justin Lecher <jlec@gentoo.org>
+ncbi-tools++-0.2010.06.15-r1.ebuild, -ncbi-tools++-2010.06.15.ebuild:
Drop old, duplicate with lower version number for new versioning schema
03 Jun 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-gcc47.patch:
Fix for gcc-4.7; add rpath on prefix
24 Nov 2011; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-glibc-214.patch:
Fix compilation against glbc-2.1.4 (changed declaration of type for
__malloc_initialize_hook from void to volatile
23 Sep 2011; Lars Wendler <polynomial-c@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-libpng15.patch:
non-maintainer commit: Added a patch to fix compilation with libpng15 (bug
#383721).
05 May 2011; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
-files/ncbi-tools++-2010.06.15-asneeded.patch,
-files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
Mirrored large patches
*ncbi-tools++-2010.06.15-r1 (04 May 2011)
04 May 2011; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r6.ebuild, ncbi-tools++-2010.06.15.ebuild,
+ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-asneeded.patch,
+files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
Fix for asneeded, #297193; removed old, #312921
02 May 2011; Justin Lecher <jlec@gentoo.org> ncbi-tools++-2010.06.15.ebuild,
+files/ncbi-tools++-2010.06.15-gcc46.patch:
Fix for gcc46
*ncbi-tools++-2010.06.15 (26 Sep 2010)
26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org>
+ncbi-tools++-2010.06.15.ebuild:
Version bump
*ncbi-tools++-2009.05.15-r6 (26 Jun 2010)
26 Jun 2010; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r5.ebuild, +ncbi-tools++-2009.05.15-r6.ebuild,
+files/ncbi-tools++-2009.05.15-asneeded.patch:
Fixed as-needed problem
26 Jun 2010; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2009.05.15-r5.ebuild:
Added no-as-needed
*ncbi-tools++-2009.05.15-r5 (24 Jun 2010)
24 Jun 2010; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r4.ebuild, +ncbi-tools++-2009.05.15-r5.ebuild:
Never set LD_LIBRARY_PATH, use LDPATH
*ncbi-tools++-2009.05.15-r4 (31 May 2010)
31 May 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r3.ebuild, +ncbi-tools++-2009.05.15-r4.ebuild:
Address bug 300722, bug 312921
*ncbi-tools++-2009.05.15-r3 (11 Mar 2010)
11 Mar 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r2.ebuild, +ncbi-tools++-2009.05.15-r3.ebuild:
Enable --with-mt
07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
ncbi-tools++-2009.05.15-r2.ebuild:
Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me
*ncbi-tools++-2009.05.15-r2 (26 Feb 2010)
26 Feb 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r1.ebuild, +ncbi-tools++-2009.05.15-r2.ebuild:
Set custom lib dir, bug 306595
12 Jan 2010; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Postpone stabilization due to QA problems
29 Dec 2009; Christian Faulhammer <fauli@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
stable x86, bug 298778
02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Update description
19 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Fix collision with dynamic libs
*ncbi-tools++-2009.05.15-r1 (18 Aug 2009)
18 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15.ebuild, +ncbi-tools++-2009.05.15-r1.ebuild:
Remove static linking and fix fPIC issues, re-keyword amd64
10 Aug 2009; Samuli Suominen <ssuominen@gentoo.org>
ncbi-tools++-2009.05.15.ebuild,
+files/ncbi-tools++-2009.05.15-gcc44.patch:
Fix building with GCC 4.4+ wrt #280237. Keyword -amd64 because the build
system doesn't support x86_64 (relocation R_X86_64_32S -fPIC issues).
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15.ebuild:
Avoid collision with openrc
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15.ebuild:
Fix typo
*ncbi-tools++-2009.05.15 (27 Jul 2009)
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+ncbi-tools++-2009.05.15.ebuild:
Import from Science overlay
25 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
Version bump
28 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
New package, ebuild written by me
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.28 2013/03/11 16:16:48 jlec Exp $
11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
28 Feb 2013; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2010.06.15-r1.ebuild, metadata.xml:
Drop old
05 Nov 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-0.2010.06.15-r1.ebuild:
Correct patch naming again
03 Nov 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-0.2010.06.15-r1.ebuild:
Correct for new version number
*ncbi-tools++-0.2010.06.15-r1 (02 Nov 2012)
02 Nov 2012; Justin Lecher <jlec@gentoo.org>
+ncbi-tools++-0.2010.06.15-r1.ebuild, -ncbi-tools++-2010.06.15.ebuild:
Drop old, duplicate with lower version number for new versioning schema
03 Jun 2012; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-gcc47.patch:
Fix for gcc-4.7; add rpath on prefix
24 Nov 2011; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-glibc-214.patch:
Fix compilation against glbc-2.1.4 (changed declaration of type for
__malloc_initialize_hook from void to volatile
23 Sep 2011; Lars Wendler <polynomial-c@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-libpng15.patch:
non-maintainer commit: Added a patch to fix compilation with libpng15 (bug
#383721).
05 May 2011; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2010.06.15-r1.ebuild,
-files/ncbi-tools++-2010.06.15-asneeded.patch,
-files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
Mirrored large patches
*ncbi-tools++-2010.06.15-r1 (04 May 2011)
04 May 2011; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r6.ebuild, ncbi-tools++-2010.06.15.ebuild,
+ncbi-tools++-2010.06.15-r1.ebuild,
+files/ncbi-tools++-2010.06.15-asneeded.patch,
+files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
Fix for asneeded, #297193; removed old, #312921
02 May 2011; Justin Lecher <jlec@gentoo.org> ncbi-tools++-2010.06.15.ebuild,
+files/ncbi-tools++-2010.06.15-gcc46.patch:
Fix for gcc46
*ncbi-tools++-2010.06.15 (26 Sep 2010)
26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org>
+ncbi-tools++-2010.06.15.ebuild:
Version bump
*ncbi-tools++-2009.05.15-r6 (26 Jun 2010)
26 Jun 2010; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r5.ebuild, +ncbi-tools++-2009.05.15-r6.ebuild,
+files/ncbi-tools++-2009.05.15-asneeded.patch:
Fixed as-needed problem
26 Jun 2010; Justin Lecher <jlec@gentoo.org>
ncbi-tools++-2009.05.15-r5.ebuild:
Added no-as-needed
*ncbi-tools++-2009.05.15-r5 (24 Jun 2010)
24 Jun 2010; Justin Lecher <jlec@gentoo.org>
-ncbi-tools++-2009.05.15-r4.ebuild, +ncbi-tools++-2009.05.15-r5.ebuild:
Never set LD_LIBRARY_PATH, use LDPATH
*ncbi-tools++-2009.05.15-r4 (31 May 2010)
31 May 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r3.ebuild, +ncbi-tools++-2009.05.15-r4.ebuild:
Address bug 300722, bug 312921
*ncbi-tools++-2009.05.15-r3 (11 Mar 2010)
11 Mar 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r2.ebuild, +ncbi-tools++-2009.05.15-r3.ebuild:
Enable --with-mt
07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
ncbi-tools++-2009.05.15-r2.ebuild:
Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me
*ncbi-tools++-2009.05.15-r2 (26 Feb 2010)
26 Feb 2010; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15-r1.ebuild, +ncbi-tools++-2009.05.15-r2.ebuild:
Set custom lib dir, bug 306595
12 Jan 2010; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Postpone stabilization due to QA problems
29 Dec 2009; Christian Faulhammer <fauli@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
stable x86, bug 298778
02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Update description
19 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15-r1.ebuild:
Fix collision with dynamic libs
*ncbi-tools++-2009.05.15-r1 (18 Aug 2009)
18 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
-ncbi-tools++-2009.05.15.ebuild, +ncbi-tools++-2009.05.15-r1.ebuild:
Remove static linking and fix fPIC issues, re-keyword amd64
10 Aug 2009; Samuli Suominen <ssuominen@gentoo.org>
ncbi-tools++-2009.05.15.ebuild,
+files/ncbi-tools++-2009.05.15-gcc44.patch:
Fix building with GCC 4.4+ wrt #280237. Keyword -amd64 because the build
system doesn't support x86_64 (relocation R_X86_64_32S -fPIC issues).
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15.ebuild:
Avoid collision with openrc
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org>
ncbi-tools++-2009.05.15.ebuild:
Fix typo
*ncbi-tools++-2009.05.15 (27 Jul 2009)
27 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+ncbi-tools++-2009.05.15.ebuild:
Import from Science overlay
25 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
Version bump
28 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
New package, ebuild written by me