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sci-biology/allpaths

De novo assembly of whole-genome shotgun microreads

Screenshots

  • allpaths-3.1-r1
    ~amd64 ~x86
    openmp

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    Overlay: funtoo (distro)
  • allpaths-3.1-r1
    ~amd64 ~x86
    openmp

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    Overlay: gentoo (distro)
  • allpaths-3.1
    ~amd64 ~x86

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    Overlay: gentoo (distro)
  • allpaths-3.1
    ~amd64 ~x86

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    Overlay: funtoo (distro)
  • allpaths-2.0
    amd64 x86

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    Overlay: funtoo (distro)
  • allpaths-2.0
    amd64 x86

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    Overlay: gentoo (distro)

ChangeLog

# ChangeLog for sci-biology/allpaths
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.11 2013/03/11 14:35:42 jlec Exp $

11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly

19 Nov 2012; Justin Lecher <jlec@gentoo.org> allpaths-2.0.ebuild,
allpaths-3.1.ebuild, allpaths-3.1-r1.ebuild:
Block sci-biology/allpathslg due to file collision, #443740

*allpaths-3.1-r1 (08 Nov 2012)

08 Nov 2012; Justin Lecher <jlec@gentoo.org> +allpaths-3.1-r1.ebuild,
+files/allpaths-3.1-boost-1.50-2.patch, +files/allpaths-3.1-boost-1.50.patch,
files/allpaths-3.1-gcc4.7.patch, +files/allpaths-3.1-linking.patch:
Fix for latest boost, #421727; fix for additional problem with gcc-4.7;
enable openmp support; Respect LDFALGS and CFLAGS everywhere; make it gold
resistant

30 Aug 2012; Justin Lecher <jlec@gentoo.org> allpaths-3.1.ebuild:
Respect CXXFLAGS

30 Aug 2012; Justin Lecher <jlec@gentoo.org> allpaths-3.1.ebuild,
+files/allpaths-3.1-gcc4.7.patch:
Fix for gcc-4.7

*allpaths-3.1 (26 Jan 2010)

26 Jan 2010; Andrey Kislyuk <weaver@gentoo.org> +allpaths-3.1.ebuild:
Version bump

03 Jan 2010; Pacho Ramos <pacho@gentoo.org> allpaths-2.0.ebuild:
amd64 stable, bug 290927

24 Nov 2009; Christian Faulhammer <fauli@gentoo.org> allpaths-2.0.ebuild:
stable x86, bug 290927

20 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
+files/allpaths-2.0-gcc-x86-no-autocast.patch, allpaths-2.0.ebuild:
Fix compile issue on x86, bug 279711

07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> allpaths-2.0.ebuild:
Typo and collision fixes

*allpaths-2.0 (07 Jul 2009)

07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+allpaths-2.0.ebuild:
New package, ebuild written by me