#!/bin/sh # # This file sets up the appropriate environmental variables and paths # for CNSsolve. In the case of the same machines with different versions # of the OS, backward compatibility is assumed - ie. a later version will # be setup for a previous version of the OS if nothing else is available. # # written by: Paul Adams # # copyright Yale University # # ========================================================================== # # >>>>>> Important: define the location of the CNSsolve directory <<<<<< # # CHANGE THE NEXT LINE TO POINT TO THE LOCATION OF THE CNSsolve DIRECTORY CNS_SOLVE=_CNSsolve_location_ # # ========================================================================== # # full expansion of the CNS_SOLVE variable prior to use. # export CNS_SOLVE; CNS_SOLVE=$CNS_SOLVE # # ========================================================================== # # get the machine architecture # if [ -d $CNS_SOLVE ]; then if [ ! "$CNS_ARCH" ]; then export CNS_ARCH; CNS_ARCH=`$CNS_SOLVE/bin/getarch` fi else export CNS_ARCH; CNS_ARCH='unknown' fi # # ========================================================================== # # system variables for OpenMP # # The default stack sizes are usually insufficient, especially when # CNS is compiled using OpenMP. If the stack sizes are too # small segfaults may occur. Recommended setting for "stacksize": limit stacksize unlimited # # KMP_STACKSIZE is specific for Intel ifort, icc: ##setenv KMP_STACKSIZE 256m # # OMP_STACKSIZE is used by all compilers: setenv OMP_STACKSIZE 256m # # Uncomment the following line and change as appropriate to set the number # of processors (threads) to use. ###setenv OMP_NUM_THREADS 4 # # ========================================================================== # # general environmental variables # export CNS_LIB; CNS_LIB=$CNS_SOLVE/libraries export CNS_MODULE; CNS_MODULE=$CNS_SOLVE/modules export CNS_TOPPAR; CNS_TOPPAR=$CNS_LIB/toppar export CNS_CONFDB; CNS_CONFDB=$CNS_LIB/confdb export CNS_XTALLIB; CNS_XTALLIB=$CNS_LIB/xtal export CNS_NMRLIB; CNS_NMRLIB=$CNS_LIB/nmr export CNS_XRAYLIB; CNS_XRAYLIB=$CNS_LIB/xray export CNS_XTALMODULE; CNS_XTALMODULE=$CNS_MODULE/xtal export CNS_NMRMODULE; CNS_NMRMODULE=$CNS_MODULE/nmr export CNS_HELPLIB; CNS_HELPLIB=$CNS_SOLVE/helplib # # general user aliases # cns_web () { $CNS_SOLVE/bin/cns_web; } cns_header () { $CNS_SOLVE/bin/cns_header; } cns_info () { cat $CNS_SOLVE/bin/cns_info; } cns_transfer () { $CNS_SOLVE/bin/cns_transfer; } if [ -x $CNS_SOLVE/bin/cns_edit_local ]; then cns_edit () { $CNS_SOLVE/bin/cns_edit_local; } else cns_edit () { $CNS_SOLVE/bin/cns_edit; } fi # # g77 compilation and use # g77on () { CNS_G77=ON; . $CNS_SOLVE/.cns_solve_env_sh; } g77off () { unset CNS_G77; . $CNS_SOLVE/.cns_solve_env_sh; } # # developer aliases # run_tests () { $CNS_SOLVE/bin/run_tests; } run_diffs () { $CNS_SOLVE/bin/run_diffs; } maketar () { $CNS_SOLVE/bin/maketar; } create_patch () { $CNS_SOLVE/bin/create_patch; } # # # ========================================================================== # # to do expansions - unset noglob just in case user has it otherwise # set +f # # try to set up appropriate path # # first strip off any trailing information (eg. _g77) # CNS_ARCH=`echo ${CNS_ARCH} | sed -e 's/_g77//g'` # cns_vendor=`echo $CNS_ARCH | awk 'BEGIN{FS="-"}{print $1}'` cns_cpu=`echo $CNS_ARCH | awk 'BEGIN{FS="-"}{print $2}'` cns_os=`echo $CNS_ARCH | awk 'BEGIN{FS="-"}{print $3}'` cns_major=`echo $CNS_ARCH | awk 'BEGIN{FS="-"}{print $4}'` cns_minor=`echo $cns_major | sed -e 's/\./ /g'` # # if we are looking for a specific type of setup then limit search # cns_dirs="" if [ ! "$CNS_G77" ]; then if /bin/ls -d $CNS_SOLVE/$cns_vendor-* >/dev/null 2>&1 ; then cns_dirs="`/bin/ls -d $CNS_SOLVE/$cns_vendor-* 2>&1 | awk 'BEGIN{FS="/"}{print $NF}' | sort -t\- -n -r -k 3 -k 4`" fi else CNS_ARCH="${CNS_ARCH}_g77" if /bin/ls -d $CNS_SOLVE/$cns_vendor-*_g77 >/dev/null 2>&1 ; then cns_dirs="`/bin/ls -d $CNS_SOLVE/$cns_vendor-*_g77 2>&1 | awk 'BEGIN{FS="/"}{print $NF}' | sort -t\- -n -r -k 3 -k 4`" fi fi # # first look for an exact match (with os version) # # cns_found=0 if [ -n "$cns_dirs" ]; then for cns_dir in $cns_dirs ; do cns_tmp_major=`echo $cns_dir | awk 'BEGIN{FS="-"}{print $4}'` if [ -f $CNS_SOLVE/$cns_dir/bin/cns_solve ]; then if [ $cns_dir = ${cns_vendor}-${cns_cpu}-${cns_os}-${cns_major} -o \ $cns_dir = ${cns_vendor}-${cns_cpu}-${cns_os}-${cns_major}_g77 ]; then cns_archenv=$cns_dir cns_found=1 fi fi done # # # now look for an exact match (without os version) # if [ $cns_found -eq 0 ]; then for cns_dir in $cns_dirs ; do if [ -f $CNS_SOLVE/$cns_dir/bin/cns_solve ]; then if [ $cns_dir = ${cns_vendor}-${cns_cpu}-${cns_os} -o \ $cns_dir = ${cns_vendor}-${cns_cpu}-${cns_os}_g77 ]; then cns_archenv=$cns_dir cns_found=1 fi fi done fi # # now look for a backwards compatible match (with os version major/minor) # if [ $cns_found -eq 0 ]; then for cns_dir in $cns_dirs ; do if [ $cns_found -eq 0 ]; then cns_tmp_major=`echo $cns_dir | awk 'BEGIN{FS="-"}{print $4}' | sed 's/_g77//g'` if [ -f $CNS_SOLVE/$cns_dir/bin/cns_solve ]; then if [ $cns_dir = ${cns_vendor}-${cns_cpu}-${cns_os}-* ]; then osv_test=`echo $cns_major $cns_tmp_major | awk '{if ($1 > $2) print 1}'` if [ $osv_test -eq 1 ]; then cns_archenv=$cns_dir cns_found=1 fi fi fi fi done fi # # now look for a wildcard match on cpu # if [ $cns_found -eq 0 ]; then cpu_cpu=`echo $cns_cpu | sed 's/[0-9]*\.*[0-9]*$//'` cpu_ver=`echo $cns_cpu | sed 's/[A-Za-z]*//'` for cns_dir in $cns_dirs ; do if [ $cns_found -eq 0 ]; then cns_tmp_cpu=`echo $cns_dir | awk 'BEGIN{FS="-"}{print $2}' | sed 's/[0-9]*\.*[0-9]*$//'` cns_tmp_ver=`echo $cns_dir | awk 'BEGIN{FS="-"}{print $2}' | sed 's/[A-Za-z]*//'` if [ -f $CNS_SOLVE/$cns_dir/bin/cns_solve ]; then if [ $cns_dir = ${cns_vendor}-${cpu_cpu}*-${cns_os}-${cns_major} -o \ $cns_dir = ${cns_vendor}-${cpu_cpu}*-${cns_os}-${cns_major}_g77 ]; then cpu_test=`echo $cpu_ver $cns_tmp_ver | awk '{if ($1 > $2) print 1}'` if [ $cpu_test -eq 1 ]; then cns_archenv=$cns_dir cns_found=1 fi fi fi fi done fi fi # # if found set environment # if [ $cns_found -eq 1 ]; then # # set installation and source directory # export CNS_INST; CNS_INST=$CNS_SOLVE/$cns_archenv export CNS_SOURCE; CNS_SOURCE=$CNS_INST/source # # path for CNSsolve utility programs # if [ -d $CNS_SOLVE/$cns_archenv/utils ]; then export PATH; PATH=`$CNS_SOLVE/bin/modify_path -sh $CNS_SOLVE/$cns_archenv/utils` fi # # path for CNSsolve executable if installed # if [ -d $CNS_SOLVE/$cns_archenv/bin ]; then export PATH; PATH=`$CNS_SOLVE/bin/modify_path -sh $CNS_SOLVE/$cns_archenv/bin` fi fi # unset cns_vendor cns_cpu cns_os cns_major cns_minor cns_tmp_major cns_tmp_minor unset cns_dir cns_dirs cns_found cns_archenv cns_diff cns_count cns_same unset cpu_cpu cpu_ver cns_tmp_cpu cns_tmp_ver cpu_test osv_test #