# Copyright 1999-2020 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Surrogate Variable Analysis'
KEYWORDS="~amd64"
SRC_URI="http://master.bioconductor.org/packages/3.9/bioc/src/contrib/sva_3.32.1.tar.gz"
LICENSE='Artistic-2'

IUSE="${IUSE-} r_suggests_biocstyle r_suggests_pamr r_suggests_testthat"
R_SUGGESTS="
	r_suggests_biocstyle? ( sci-BIOC/BiocStyle )
	r_suggests_pamr? ( sci-CRAN/pamr )
	r_suggests_testthat? ( sci-CRAN/testthat )
"
DEPEND="virtual/Matrix
	sci-BIOC/genefilter
	virtual/mgcv
	>=dev-lang/R-3.2
	sci-BIOC/BiocParallel
	sci-BIOC/limma
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=(
	'bladderbatch'
	'zebrafishRNASeq'
)