# Copyright 1999-2020 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Summarize, Analyze and Visualize MAF Files'
KEYWORDS="~amd64"
SRC_URI="http://master.bioconductor.org/packages/3.9/bioc/src/contrib/maftools_2.0.16.tar.gz"
LICENSE='MIT'

IUSE="${IUSE-} r_suggests_biostrings r_suggests_knitr r_suggests_mclust
	r_suggests_rjson r_suggests_rmarkdown"
R_SUGGESTS="
	r_suggests_biostrings? ( sci-BIOC/Biostrings )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_mclust? ( sci-CRAN/mclust )
	r_suggests_rjson? ( sci-CRAN/rjson )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
"
DEPEND=">=dev-lang/R-3.3
	sci-CRAN/NMF
	sci-CRAN/RColorBrewer
	sci-CRAN/data_table
	sci-CRAN/cometExactTest
	sci-CRAN/wordcloud
	virtual/survival
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=( 'sci-BIOC/BSgenome' )