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dev-util/valgrind
An open-source memory debugger for GNU/Linux
dev-libs/boost
Boost Libraries for C++
sys-cluster/charm
Message-passing parallel language and runtime system
sci-visualization/paraview
Powerful scientific data visualization application
dev-python/h5py
Simple Python interface to HDF5 files
sci-libs/cgnslib
CFD General Notation System standard library
sci-chemistry/gromacs
The ultimate molecular dynamics simulation package
sci-biology/mothur
A suite of algorithms for ecological bioinformatics
sci-biology/infernal
Inference of RNA alignments
sci-biology/mrbayes
Bayesian Inference of Phylogeny
sci-libs/hdf5
General purpose library and file format for storing scientific data
sci-libs/vtk
The Visualization Toolkit
sci-libs/netcdf
Scientific library and interface for array oriented data access
dev-lang/yap
YAP is a high-performance Prolog compiler
dev-util/nvidia-cuda-sdk
NVIDIA CUDA Software Development Kit
dev-libs/maloc
Minimal Abstraction Layer for Object-oriented C/C++ programs
sci-mathematics/gretl
Regression, econometrics and time-series library
sci-mathematics/xmds
XMDS - The eXtensible Multi-Dimensional Simulator
sci-physics/root
C++ data analysis framework and interpreter from CERN
media-libs/vigra
C++ computer vision library emphasizing customizable algorithms and structures
sci-libs/gerris
Gerris Flow Solver
sci-libs/fftw
Fast C library for the Discrete Fourier Transform
sci-libs/arpack
Arnoldi package library to solve large scale eigenvalue problems
sci-libs/mathgl
Math Graphics Library
sci-chemistry/mpqc
The Massively Parallel Quantum Chemistry Program
sci-biology/hmmer
Sequence analysis using profile hidden Markov models
sci-biology/tree-puzzle
Maximum likelihood analysis for nucleotide, amino acid, and two-state data
sci-biology/clustalw-mpi
An MPI implemention of the ClustalW general purpose multiple alignment algorithm
sci-libs/scotch
Software for graph, mesh and hypergraph partitioning
media-gfx/tachyon
A portable, high performance parallel ray tracing system
sci-libs/punc
Portable Understructure for Numerical Computing
sci-libs/coinor-clp
COIN-OR linear programming solver
sci-libs/ipopt
Interior-Point Optimizer for large-scale nonlinear optimization
sci-libs/mumps
MUltifrontal Massively Parallel sparse direct matrix Solver
dev-libs/starpu
Unified runtime system for heterogeneous multicore architectures
sci-libs/adolc
Automatic differentiation system for C/C++
sci-libs/flann
Fast approximate nearest neighbor searches in high dimensional spaces
sci-libs/hypre
Parallel matrix preconditioners library
sci-libs/lis
Library of Iterative Solvers for Linear Systems
sci-libs/lrslib
Reverse-search algorithm for vertex enumeration problems
sci-mathematics/form
Symbolic Manipulation System
sci-physics/reduze
Program for reducing Feynman integrals
sci-mathematics/msieve
A C library implementing a suite of algorithms to factor large integers
sci-libs/libgeodecomp
An auto-parallelizing library to speed up computer simulations
sys-cluster/hpx
C++ runtime system for parallel and distributed applications
sci-physics/lammps
Large-scale Atomic/Molecular Massively Parallel Simulator
sys-cluster/mpich
A high performance and portable MPI implementation
sci-libs/pastix
Parallel solver for very large sparse linear systems
app-crypt/wisecracker
An open source framework for tools that can distribute brute force cryptanalysis
sci-astronomy/montage
Toolkit for assembling FITS images into mosaics